BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZA04RM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1394 1427 0.0
>3x_Contig1394
Length = 5721
Score = 1427 bits (720), Expect = 0.0
Identities = 755/764 (98%), Gaps = 2/764 (0%)
Strand = Plus / Minus
Query: 37 ctttaccgttcca-cactgacgaaaagtacttgtgtacttggggtattgacagtgcctac 95
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 ctttaccgttccaacactgacgaaaagtacttgtgtacttggggtattgacagtgcctac 800
Query: 96 gtcgttaacgaattgtctgacgtcgtctccatctgtagaaccgattacccaggtactgaa 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 gtcgttaacgaattgtctgacgtcgtctccatctgtagaaccgattacccaggtactgaa 740
Query: 156 aacatggttatcccaactattgtcaacggtggtagcaagttaccattgaccgttgtcgac 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aacatggttatcccaactattgtcaacggtggtagcaagttaccattgaccgttgtcgac 680
Query: 216 caggatacatactacacatggcaaggaatgaagacatcggctcaatactacgttaacaat 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 caggatacatactacacatggcaaggaatgaagacatcggctcaatactacgttaacaat 620
Query: 276 gctggtgtttctaaggaggatggttgtgtctggggtacttctgggtctggtattggtaac 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gctggtgtttctaaggaggatggttgtgtctggggtacttctgggtctggtattggtaac 560
Query: 336 tgggctccattgaacttcggtgctggtgccactggcggtatctcttatctgtctttgatt 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tgggctccattgaacttcggtgctggtgccactggcggtatctcttatctgtctttgatt 500
Query: 396 ccaaacccaaacaaccgtgaagcagccaacttcaacgtcaagattgttgcagctgacggt 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ccaaacccaaacaaccgtgaagcagccaacttcaacgtcaagattgttgcagctgacggt 440
Query: 456 ggtagcgtcatcggagaatgtgtttacgaaaacggttcctacaacggtggtagcgatggt 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ggtagcgtcatcggagaatgtgtttacgaaaacggttcctacaacggtggtagcgatggt 380
Query: 516 tgtaccgtttcagtgacttctggtgctgctaatttcgttttatacgattaatgactcttt 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tgtaccgtttcagtgacttctggtgctgctaatttcgttttatacgattaatgactcttt 320
Query: 576 tcagaggcattggcgggatgttatttaccgttgctgtttttcttttctttcctagtctgc 635
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 319 tcagaggcattggcgggatgttatttaccgttgctgtttttcttttcttccctagtctgc 260
Query: 636 tatctgaattctctgtatctgtc-aaaattgaaatggaactaacatcattaatggtgtca 694
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 259 tatctgaatcctctgtatctgtcaaaaattgaaatggaactaacatcattaatggtgtca 200
Query: 695 tgttgtgcgtgtgtgcatatttttgtgagtactatcttcatgaaagcacgaaacattttc 754
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 199 tgttgtgcgtgtgtgcatatttttgtgagtactatctccatgaaagcacgaagcattttc 140
Query: 755 aatcgacctataaaaatgtacccttattgcgtttcgtacgtttt 798
||||||||||||| |||||||||| ||||||| |||||||||||
Sbjct: 139 aatcgacctataagaatgtaccctcattgcgtctcgtacgtttt 96
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6584
Number of Sequences: 1807
Number of extensions: 6584
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)