BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZA05FM1.SCF screened BAC_end
(992 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1702 987 0.0
>3x_Contig1702
Length = 15454
Score = 987 bits (498), Expect = 0.0
Identities = 545/554 (98%), Gaps = 5/554 (0%)
Strand = Plus / Minus
Query: 86 ctcaattgcactgggttcctcaccatataacgaaatgtaatctacacccttcaacatata 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12343 ctcaattgcactgggttcctcaccatataacgaaatgtaatctacacccttcaacatata 12284
Query: 146 atgagttccacttaccataaaatacgtaaacgtcctgacggcaccactcacttcgttact 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12283 atgagttccacttaccataaaatacgtaaacgtcctgacggcaccactcacttcgttact 12224
Query: 206 gagatgcatactttttttacttagtaacaacctccgttgtacaatcccttcattcgaatg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12223 gagatgcatactttttttacttagtaacaacctccgttgtacaatcccttcattcgaatg 12164
Query: 266 aagtgtaatcgttattgatactttcaaataaagttaacttaaaatgctgcgtggtcttta 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12163 aagtgtaatcgttattgatactttcaaataaagttaacttaaaatgctgcgtggtcttta 12104
Query: 326 tttacagaattatttactttaatgtgaaatgtccagtaggtagtctttaatttcgatgca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12103 tttacagaattatttactttaatgtgaaatgtccagtaggtagtctttaatttcgatgca 12044
Query: 386 agcgcacatcataattttgaagtggagaagacgttgttgtacaatttttgaatgtggtag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12043 agcgcacatcataattttgaagtggagaagacgttgttgtacaatttttgaatgtggtag 11984
Query: 446 gcaacacccatcgaggtctcgaatcccatcccaccaagaccataagcatgaataactggc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11983 gcaacacccatcgaggtctcgaatcccatcccaccaagaccataagcatgaataactggc 11924
Query: 506 atttgttctccatcaggacttttattgaactcgagttctacacgcgaaccttctactctt 565
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
Sbjct: 11923 atttgttctccatcaggactcttattgaactcgagttctacacgcgaacctcctactc-t 11865
Query: 566 taacggtctgaaaccaacggttaacgttcttgattttcgagagttttcaagcaattcagg 625
|| ||||||||||||||| ||| |||||||||| |||||| |||||||||||||||||||
Sbjct: 11864 tagcggtctgaaaccaac-gttgacgttcttga-tttcga-agttttcaagcaattcagg 11808
Query: 626 gaaaaagtttctta 639
| ||||||||||||
Sbjct: 11807 g-aaaagtttctta 11795
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6582
Number of Sequences: 1807
Number of extensions: 6582
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 992
length of database: 10,358,551
effective HSP length: 16
effective length of query: 976
effective length of database: 10,329,639
effective search space: 10081727664
effective search space used: 10081727664
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)