BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZA05RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1481 1503 0.0
>3x_Contig1481
Length = 8252
Score = 1503 bits (758), Expect = 0.0
Identities = 842/866 (97%), Gaps = 3/866 (0%)
Strand = Plus / Minus
Query: 48 ttgagtggaggcatatacacagaaaatggagccaagcaatttccattatataagaaaatg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6348 ttgagtggaggcatatacacagaaaatggagccaagcaatttccattatataagaaaatg 6289
Query: 108 gagttatattttgacgactttgattttacacctttgatgatacaggaaaactacacctca 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6288 gagttatattttgacgactttgattttacacctttgatgatacaggaaaactacacctca 6229
Query: 168 acaacacctactttattaagaaagggccaaacacatctaaatgctgttgctgctgctgcc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6228 acaacacctactttattaagaaagggccaaacacatctaaatgctgttgctgctgctgcc 6169
Query: 228 gaatctatttcagagggagaccttgtcgacaaaaaaattcgtagtgccgagcagcagtgg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6168 gaatctatttcagagggagaccttgtcgacaaaaaaattcgtagtgccgagcagcagtgg 6109
Query: 288 tctctgttgcctctacatgctgtcttatcaactgtaagacctgcctcaatggtcgccggt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6108 tctctgttgcctctacatgctgtcttatcaactgtaagacctgcctcaatggtcgccggt 6049
Query: 348 aatgttaccagaaggattaatttctcggccttcctagggcagaactctaagacgggtaaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6048 aatgttaccagaaggattaatttctcggccttcctagggcagaactctaagacgggtaaa 5989
Query: 408 ttttacagacttttacaggacattcagtatcacacaaggttgagcacttctacgaataaa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5988 ttttacagacttttacaggacattcagtatcacacaaggttgagcacttctacgaataaa 5929
Query: 468 atgggattacgtctacagtatatgccaacaatgaaaagacatttacttgaccctcttctt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5928 atgggattacgtctacagtatatgccaacaatgaaaagacatttacttgaccctcttctt 5869
Query: 528 cgtgatggttctgccgcgattgagaatgttattaatttcatggacgattattacctttca 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5868 cgtgatggttctgccgcgattgagaatgttattaatttcatggacgattattacctttca 5809
Query: 588 aaagatcattgggactcgataatgcaattctatgttggtactgatgacaccacagcagca 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5808 aaagatcattgggactcgataatgcaattctatgttggtactgatgacaccacagcagca 5749
Query: 648 ttaatatcgataccatccagtactaaatcagctttcactcgggcctataataatgtctcg 707
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5748 ttaaaatcgataccatccagtactaaatcagctttcactcgggcctataataatgtctcg 5689
Query: 708 cacccaactcctataatgaaactaggagttagcactggaaaggccactgctgcggcacgt 767
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 5688 cacccaactcctataatgaaactaggagtaagcactggaagggccactgctgcggcacgt 5629
Query: 768 tcagatttcgaggatgttgtcgattatgaccatgatgtcccaattgaagaagagaat-ct 826
||||||||||||||||||||||| ||||| |||| |||||| | |||||||||||| ||
Sbjct: 5628 ccagatttcgaggatgttgtcgataatgacgatgaggtcccagtagaagaagagaatcct 5569
Query: 827 aaggaccaagatgaaaatcga-tttaaggatgaataatccatcaagcaagtcggttaaaa 885
|||||| |||||| ||||||| |||||| | || ||| |||||||||||||||| ||||
Sbjct: 5568 aaggacgaagatg-aaatcgattttaagaaagataaattcatcaagcaagtcggtaaaaa 5510
Query: 886 gtaaacccaattccaaacaaaaaaag 911
| ||||| ||| | ||||||| ||||
Sbjct: 5509 gaaaaccaaatccaaaacaaagaaag 5484
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7544
Number of Sequences: 1807
Number of extensions: 7544
Number of successful extensions: 79
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)