BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZA06RM1.SCF screened BAC_end
(894 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig819 1271 0.0
>3x_Contig819
Length = 3350
Score = 1271 bits (641), Expect = 0.0
Identities = 761/790 (96%), Gaps = 10/790 (1%)
Strand = Plus / Plus
Query: 41 gcttaccgaaggattttgtaataaaggaacattttgaagagattcaagagttattaaaca 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 gcttaccgaaggattttgtaataaaggaacattttgaagagattcaagagttattaaaca 821
Query: 101 aggattcggacttgaaaagcttacacgaagacgttgtcccagcacctcttgatgatgcaa 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 aggattcggacttgaaaagcttacacgaagacgttgtcccagcacctcttgatgatgcaa 881
Query: 161 cattttggaatatttacttcactaagaaggcggagattctaaatttggcctcaaagaagc 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 cattttggaatatttacttcactaagaaggcggagattctaaatttggcctcaaagaagc 941
Query: 221 gtgacttattaagtgccaaggaagatctaggtaaagaacaagcaataggatgggatgatg 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942 gtgacttattaagtgccaaggaagatctaggtaaagaacaagcaataggatgggatgatg 1001
Query: 281 aggaagaggattcagaagaagaaattattccttctaaaactgcaaaggctaaacaagact 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1002 aggaagaggattcagaagaagaaattattccttctaaaactgcaaaggctaaacaagact 1061
Query: 341 ccaacactggtaaggagactatttcttctgctaaaactgaatcaaaagctatcaagcaag 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1062 ccaacactggtaaggagactatttcttctgctaaaactgaatcaaaagctatcaagcaag 1121
Query: 401 aggaaaatgacgacgaagaagatgatgattgggagtagttattggaaccgatctggtgtt 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1122 aggaaaatgacgacgaagaagatgatgattgggagtagttattggaaccgatctggtgtt 1181
Query: 461 tcttcgaacactgattacattttgtatttccctacttaattaattattatacttacatgt 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1182 tcttcgaacactgattacattttgtatttccctacttaattaattattatacttacatgt 1241
Query: 521 taactctacggtaaaacagcacatatgcattatgtgtgatatattcgtccttccttctaa 580
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1242 taactctacggtaaaacagcacatatgcattaggtgtgatatattcgtccttccttctaa 1301
Query: 581 tttttctnncactgacatncatc-aaagaacaccaaccaactctgcctttgtccacatag 639
||||||| |||||||| |||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 1302 tttttctccaactgacat-catcaaaagaacaccaaccaactctgcctttgtccacaaag 1360
Query: 640 gaggtgta--tgccaccatagagcgtgccagaatgtgacgccacagcaaagagtctatag 697
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1361 gaggtgtaatggccaccatagagcgtgccagaatgtgacgccacagcaaagagtctatag 1420
Query: 698 tt-aatggtgggctttgaccacgc-attgccacgaaaccccgttat-ctttggcatttct 754
|| || ||||| ||||||||||| || || ||||||||||||||| |||||||||||||
Sbjct: 1421 ttgaagggtggcttttgaccacgcaatggcaacgaaaccccgttatcctttggcatttct 1480
Query: 755 ccattggtatcg-cgatccaaaaccca-tttagtctatttcattgggat-attgacaaaa 811
|||||| |||| |||||||||| ||| || |||||| |||||| |||| ||||||||||
Sbjct: 1481 ccattgtaatcgtcgatccaaaagccagttaagtctagttcatttggataattgacaaaa 1540
Query: 812 ccgtggtttt 821
||| |||||
Sbjct: 1541 acgttgtttt 1550
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7418
Number of Sequences: 1807
Number of extensions: 7418
Number of successful extensions: 77
Number of sequences better than 1.0e-20: 1
length of query: 894
length of database: 10,358,551
effective HSP length: 16
effective length of query: 878
effective length of database: 10,329,639
effective search space: 9069423042
effective search space used: 9069423042
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)