BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC42ZA08FM1.SCF screened BAC_end (957 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig628 406 e-113 >3x_Contig628 Length = 1864 Score = 406 bits (205), Expect = e-113 Identities = 217/220 (98%), Gaps = 1/220 (0%) Strand = Plus / Plus Query: 180 gtttatatattgatccacatttctagtaccactaccaccaccggtcttagaatttctcag 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gtttatatattgatccacatttctagtaccactaccaccaccggtcttagaatttctcag 60 Query: 240 gttcaatgatagcttcttctccagttgttcttgcaaatcagctagctcgtcctgatccga 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 gttcaatgatagcttcttctccagttgttcttgcaaatcagctagctcgtcctgatccga 120 Query: 300 actttccctaaatcgtctatccacagcaagaggtangtctgtaccattttggtactcttc 359 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 121 actttccctaaatcgtctatccacagcaagaggtaggtctgtaccattttggtactcttc 180 Query: 360 aaaatcactgtttatagttcatatcatcattaagatcgct 399 |||||||||| ||||||||||||||||||| ||||||||| Sbjct: 181 aaaatcactg-ttatagttcatatcatcatcaagatcgct 219 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 31,482 Number of Sequences: 1807 Number of extensions: 31482 Number of successful extensions: 625 Number of sequences better than 1.0e-20: 1 length of query: 957 length of database: 10,358,551 effective HSP length: 16 effective length of query: 941 effective length of database: 10,329,639 effective search space: 9720190299 effective search space used: 9720190299 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)