BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC42ZA08RM1.SCF screened BAC_end (948 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1462 595 e-170 >3x_Contig1462 Length = 8247 Score = 595 bits (300), Expect = e-170 Identities = 343/352 (97%), Gaps = 4/352 (1%) Strand = Plus / Plus Query: 49 tggttttgaagttcc-cggcagttaatccagcttcgtgtttgtgattatataaaggtacg 107 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4903 tggttttgaagttccacggcagttaatccagcttcgtgtttgtgattatataaaggtacg 4962 Query: 108 ggttggacaggtccttttgttggtctagtgaaggcagggtgtgactttcttgtgccaata 167 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4963 ggttggacaggtccttttgttggtctagtgaaggcagggtgtgactttcttgtgccaata 5022 Query: 168 atcggttctactttggtaatcctctttccttttttgcctgggtctaacatataaatcatc 227 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 5023 atcggttctactttggtaatcctctttccttttttgcctgggtctaacatagaaatcatc 5082 Query: 228 attttaattgattcggtgttttcgagtctagtattgattgtttaatcatggatgattcta 287 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5083 attttaattgattcggtgttttcgagtctagtattgattgtttaatcatggatgattcta 5142 Query: 288 tgcttcagaaacgcgtggaaggtctggagagacagatctcgatgtatgaacgggttattt 347 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 5143 tgcttcagaaacgcgtggaaggtctggagagacagatctcgatgtatgaac-ggttattc 5201 Query: 348 caatccgttagtttcgaagttagatcatcattttcaagaaatccgatgtatt 399 ||||| |||| |||||||||||||||||| ||||||||||| ||||||||| Sbjct: 5202 caatcgtttag-ttcgaagttagatcatca-tttcaagaaatacgatgtatt 5251 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 25,757 Number of Sequences: 1807 Number of extensions: 25757 Number of successful extensions: 430 Number of sequences better than 1.0e-20: 1 length of query: 948 length of database: 10,358,551 effective HSP length: 16 effective length of query: 932 effective length of database: 10,329,639 effective search space: 9627223548 effective search space used: 9627223548 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)