BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZA09FM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1768 1189 0.0
>3x_Contig1768
Length = 25668
Score = 1189 bits (600), Expect = 0.0
Identities = 711/743 (95%), Gaps = 4/743 (0%)
Strand = Plus / Plus
Query: 87 cttaacttctgcatcgtcgtaggtgtcatccctttcatcttctgtggcatcatatagaag 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17395 cttaacttctgcatcgtcgtaggtgtcatccctttcatcttctgtggcatcatatagaag 17454
Query: 147 ggataaagctcttgataatgttttgtttctgacagcatcaggtacgtcgtttgtagggaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17455 ggataaagctcttgataatgttttgtttctgacagcatcaggtacgtcgtttgtagggaa 17514
Query: 207 taacatgtttttcttttcaattttgtccttcggagtgatggctggcaataaattctcctt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17515 taacatgtttttcttttcaattttgtccttcggagtgatggctggcaataaattctcctt 17574
Query: 267 cggcttatgttcctccatcaggttttcggtcgtattctgtatttcgtcatcctgcagtgg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17575 cggcttatgttcctccatcaggttttcggtcgtattctgtatttcgtcatcctgcagtgg 17634
Query: 327 cccatcttcgagtgaagatatcacagatggattttcaaacaagttattgattataacttc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17635 cccatcttcgagtgaagatatcacagatggattttcaaacaagttattgattataacttc 17694
Query: 387 cgtgttattatcatacctctgcaataattttgttatctggttagaagtaaggtccggaaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17695 cgtgttattatcatacctctgcaataattttgttatctggttagaagtaaggtccggaaa 17754
Query: 447 tagttccttgattgtgtctatttgttcaacattgacactaggcattatcagaccgcttaa 506
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 17755 tagttccttgattgtgtctatttgttcaacattgacactaggcattagcagaccgcttaa 17814
Query: 507 atggggagctgccttcggttcctcttgtatatccaaaaaggggattttagttttaatatg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17815 atggggagctgccttcggttcctcttgtatatccaaaaaggggattttagttttaatatg 17874
Query: 567 tggcaacttttcctgaaacctgncattcattaggagtgaccctaaaagtggatacattga 626
|||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||
Sbjct: 17875 tggcaacttttcctgaaacctggcatcaattagaagtgaccctaaaagtggatacattga 17934
Query: 627 aagttgtcgtaagttcgttatgctcatttgcttttaacaatcagcccaatgtgtgacgct 686
|||| |||||||||||||||||||||||||||| | |||||||| |||||||||||||
Sbjct: 17935 aagtgttcgtaagttcgttatgctcatttgctttaacaaatcagccaaatgtgtgacgct 17994
Query: 687 gcaagacaaaaagcctaatatttcaaagtttctttcccc-atctgattaataactccctg 745
||| |||||||||| ||||| ||| |||||||||||||| ||||||| ||||||||||||
Sbjct: 17995 gcaggacaaaaagcttaata-ttccaagtttctttccccaatctgataaataactccctg 18053
Query: 746 gtttcttgccattcattgacttttatgttttaaaccactttggcaaaaccaaaattattc 805
||| |||||||| |||||||| | |||| | || |||| |||||| | |||||||| ||
Sbjct: 18054 gttccttgccatacattgactctaatgtatcaacccac-ttggcagacacaaaatta-tc 18111
Query: 806 tggaaaagaacttttcgccttat 828
|| ||| ||||| ||||||||||
Sbjct: 18112 tgtaaatgaactcttcgccttat 18134
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7240
Number of Sequences: 1807
Number of extensions: 7240
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)