BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZA09RM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1785 1507 0.0
>3x_Contig1785
Length = 37935
Score = 1507 bits (760), Expect = 0.0
Identities = 846/867 (97%), Gaps = 6/867 (0%)
Strand = Plus / Minus
Query: 44 gctttcaccgagaatacatattacatcatgactcaaggtgttgctaaggatttttcacac 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18302 gctttcaccgagaatacatattacatcatgactcaaggtgttgctaaggatttttcacac 18243
Query: 104 ttgtacagtgatgagactaaaagtcgtatgccttctcaattgaagtcaattatacattat 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18242 ttgtacagtgatgagactaaaagtcgtatgccttctcaattgaagtcaattatacattat 18183
Query: 164 ttcaatgatccaaacttgatctttttgggtggtggtttaccaatgtctgattactttcca 223
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 18182 ttcaatgatccaaacttgatctttttgggtggtggtttaccaatgtctgattacttccca 18123
Query: 224 tgggataacttgactgtggaatctcctctaccacctttctccaacggtatcggtgccaaa 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18122 tgggataacttgactgtggaatctcctctaccacctttctccaacggtatcggtgccaaa 18063
Query: 284 ccatctggggatgatgccgatacttgtcagattcatatcaccaagaacttagaggaatct 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18062 ccatctggggatgatgccgatacttgtcagattcatatcaccaagaacttagaggaatct 18003
Query: 344 caaaagggtgtcgatattccattgttcaagatctttgcaatatggttactctcaaggtca 403
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 18002 caaaagggtgtcgatattccattg-tcaagatctttgcaatatggttactctcaaggtca 17944
Query: 404 acctgaaatcacgaagttcttcaaagagcaccattctttgattcatgacatgaagtacga 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17943 acctgaaatcacgaagttcttcaaagagcaccattctttgattcatgacatgaagtacga 17884
Query: 464 gaattgggatgtgttggctaccattggtaacaccggtgcctgggaatccgtcttaagaat 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17883 gaattgggatgtgttggctaccattggtaacaccggtgcctgggaatccgtcttaagaat 17824
Query: 524 tttctgtaacagaggtgacactattcttgctgaacagttcgctttctcatcttctattat 583
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17823 tttctgtaacagaggtgacactattcttgctgaacagttcgctttctcatcttctattag 17764
Query: 584 cgctgcggaggctcaaggtgtcaacgtgttccctattccattagatgaacacggtatcat 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17763 cgctgcggaggctcaaggtgtcaacgtgttccctattccattagatgaacacggtatcat 17704
Query: 644 tccaagcaagctagagactatcttggatatctgggaccga-ggtgccgctaagccaaaaa 702
||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||
Sbjct: 17703 tccaagcaagctagagactatcttggataact-ggaccgagggtgccgctaagccaaaat 17645
Query: 703 tattatacactgtttcaactggtcaaaacccaactggttcatctttattcttcgatagga 762
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 17644 tattatacactgttccaactggtcaaaacccaactggttcatctttatccttcgatagga 17585
Query: 763 tagaagaaatctatcgtattgncc-aaagcacgattttcattatcatttgagatgaacca 821
|||||||||||||||||||| || ||||||||| ||||||||||||| ||||||||||
Sbjct: 17584 aagaagaaatctatcgtattgcccaaaagcacga-tttcattatcattgaagatgaacca 17526
Query: 822 tactactttttgccaatggaaaaatacg-aaaagatccggcaaacaggtttgtcaaattc 880
|||||||| |||| |||||||||||||| ||||||||||||||||||| ||||||||| |
Sbjct: 17525 tactacttcttgcaaatggaaaaatacgaaaaagatccggcaaacagggttgtcaaatcc 17466
Query: 881 tacgctgatcataaaaagttcattcaa 907
||||||||||||||| |||||||||||
Sbjct: 17465 tacgctgatcataaagagttcattcaa 17439
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6913
Number of Sequences: 1807
Number of extensions: 6913
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)