BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZA10FM1.SCF screened BAC_end
(970 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1659 837 0.0
>3x_Contig1659
Length = 17570
Score = 837 bits (422), Expect = 0.0
Identities = 435/438 (99%), Gaps = 1/438 (0%)
Strand = Plus / Plus
Query: 86 caccttcctttggatgaactctcatgatcaagttcttacctggagctagagtagtcaaac 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 caccttcctttggatgaactctcatgatcaagttcttacctggagctagagtagtcaaac 385
Query: 146 ccaagatgtcgatggtgtcatctgggttgatcttgtcgtaagcagctggttcagcaaagt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ccaagatgtcgatggtgtcatctgggttgatcttgtcgtaagcagctggttcagcaaagt 445
Query: 206 tcaaaggcaacataccttgtttcttcaagttagtttcgtgaattcttgcgaaggatttgg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tcaaaggcaacataccttgtttcttcaagttagtttcgtgaattcttgcgaaggatttgg 505
Query: 266 taataatagcgaaaccacccaagaatcttggttccaaggcagcgtgttcacgagaagaac 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 taataatagcgaaaccacccaagaatcttggttccaaggcagcgtgttcacgagaagaac 565
Query: 326 cttcaccgaagttttcaccaccaatgacaacccatctgatacctgcatctctgtaagctc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 cttcaccgaagttttcaccaccaatgacaacccatctgatacctgcatctctgtaagctc 625
Query: 386 tagcagtgtctggaacaccggcgtattcaccagtgtagtggtgcttgacacagttagcct 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tagcagtgtctggaacaccggcgtattcaccagtgtagtggtgcttgacacagttagcct 685
Query: 446 tcttgttttcagcgtttatagcaccaatcatatagttgtttgaaatgttttccaaatgac 505
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tcttgttttcagcgttaatagcaccaatcatatagttgtttgaaatgttttccaaatgac 745
Query: 506 cttttgtacttcaaccat 523
| | ||||||||||||||
Sbjct: 746 c-tctgtacttcaaccat 762
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6309
Number of Sequences: 1807
Number of extensions: 6309
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 970
length of database: 10,358,551
effective HSP length: 16
effective length of query: 954
effective length of database: 10,329,639
effective search space: 9854475606
effective search space used: 9854475606
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)