BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZA10RM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1774 1088 0.0
>3x_Contig1774
Length = 27771
Score = 1088 bits (549), Expect = 0.0
Identities = 634/660 (96%), Gaps = 2/660 (0%)
Strand = Plus / Minus
Query: 46 gctttaatagtcaatgtctgttcctgttcctattcctattcctattcctatttctatttc 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8031 gctttaatagtcaatgtctgttcctgttcctattcctattcctattcctatttctatttc 7972
Query: 106 aatttcaaatttcgttttcgtcttttttcatttttcctttgaaagttccagttccagttc 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7971 aatttcaaatttcgttttcgtcttttttcatttttcctttgaaagttccagttccagttc 7912
Query: 166 cagcttcagttcctgtcataaaaacactcatagtaagcagggtccttaactatgtgtgga 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7911 cagcttcagttcctgtcataaaaacactcatagtaagcagggtccttaactatgtgtgga 7852
Query: 226 aatgagaccccttttttataggagagtggccgggtaatacaaataaaatacaaataaaat 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7851 aatgagaccccttttttataggagagtggccgggtaatacaaataaaatacaaataaaat 7792
Query: 286 acacacaggtcacgtgaacacccgattacaaaagtttatcaatcaatcgatcattggaac 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7791 acacacaggtcacgtgaacacccgattacaaaagtttatcaatcaatcgatcattggaac 7732
Query: 346 cgatccagcctccttcgttttacacgtgactagaaaaagataatcaaaacacatatcgct 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7731 cgatccagcctccttcgttttacacgtgactagaaaaagataatcaaaacacatatcgct 7672
Query: 406 acttacgttagagaatatatcatcagatcacatgatacgaactggaatatttcttttcca 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7671 acttacgttagagaatatatcatcagatcacatgatacgaactggaatatttcttttcca 7612
Query: 466 tcaagtgcatctgctaaattttcaaagagatattatcagttnttcaacatagcattaact 525
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 7611 tcaagtgcatctgctaaattttcaaagagatataatcagtttttcaacatagcattaact 7552
Query: 526 aactgatcggtatagctcatcgcttgaaagaaa-tgtcttgttatccatatatctagttt 584
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 7551 aactgatcggtatagctcatcgcttgaaagaaagtgtcttgttatccatatatctagttc 7492
Query: 585 cctttcactttcacccaaaa-catttattacacttttcccacttacccctatgcttttga 643
| |||||||| || |||||| ||| ||| ||||| | |||||| || |||||| |||||
Sbjct: 7491 cttttcacttccaaccaaaagcatctatcacactctacccactacccactatgcatttga 7432
Query: 644 tgtacactttggattccccaggcaagaaaattttttctttgtaaaagatgcctggggata 703
|||||||||||||| ||| |||||||| ||| | | ||||| | |||||| ||| |||||
Sbjct: 7431 tgtacactttggatgcccaaggcaagagaatctatactttgaagaagatgactgaggata 7372
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,864
Number of Sequences: 1807
Number of extensions: 10864
Number of successful extensions: 105
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)