BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC42ZA11FM1.SCF screened BAC_end
         (973 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1484                                                        1229   0.0  

>3x_Contig1484 
          Length = 9345

 Score = 1229 bits (620), Expect = 0.0
 Identities = 690/706 (97%), Gaps = 7/706 (0%)
 Strand = Plus / Minus

                                                                        
Query: 87   cttgctgaaaagagaattcaataaaaaagataaatcagaatcgtactgtctaggtactgt 146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2971 cttgctgaaaagagaattcaataaaaaagataaatcagaatcgtactgtctaggtactgt 2912

                                                                        
Query: 147  ctctttgtcactcataccgggggtcttacttcccgtcataaacacggaccaaagaatttg 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2911 ctctttgtcactcataccgggggtcttacttcccgtcataaacacggaccaaagaatttg 2852

                                                                        
Query: 207  ttcatcattgaaatagtaaactttgaagaattctcttattcaaaaaactgcttgatgcca 266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2851 ttcatcattgaaatagtaaactttgaagaattctcttattcaaaaaactgcttgatgcca 2792

                                                                        
Query: 267  ttggaaaaccaccactataattatttcacatacccttcaatgtaagacttgtcagccaag 326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2791 ttggaaaaccaccactataattatttcacatacccttcaatgtaagacttgtcagccaag 2732

                                                                        
Query: 327  aaagtgttcaacttttgcaaggtttcgaccttggagaaatcagagaaagacatcgttaat 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2731 aaagtgttcaacttttgcaaggtttcgaccttggagaaatcagagaaagacatcgttaat 2672

                                                                        
Query: 387  ggatagttaaacctggtgagagaagaaactaggaaagaatcaattcctcttcttcttctt 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2671 ggatagttaaacctggtgagagaagaaactaggaaagaatcaattcctcttcttcttctt 2612

                                                                        
Query: 447  acaaggaacgttgaatcaaattgacgaaaaaaaaatactgaaaagctgatgaaaaactct 506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2611 acaaggaacgttgaatcaaattgacgaaaaaaaaatactgaaaagctgatgaaaaactct 2552

                                                                        
Query: 507  aattcgaaaagntccaatatatatatatatatatttatgagatatatgatatgtaagacg 566
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2551 aattcgaaaagttccaatatatatatatatatatttatgagatatatgatatgtaagacg 2492

                                                                        
Query: 567  tatgtactatggaattatggcatctacgtgtattcaaagtgcatgcaatgtgcggtggaa 626
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2491 tatgtactatggaattatggcatctacgtgtattcaaagtgcatgcaatgtgcggtggaa 2432

                                                                        
Query: 627  gaaaa-tttttttcttccttgtaagtgcgatgagatagatactgggaaagcaacagcaga 685
            ||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 2431 gaaaattttttttcttccttgtaagtgcgatgagatagatactggaaaggcaacagcaga 2372

                                                                        
Query: 686  aaacatggcacgctggggggtgccctgcgacaattttgaaaaaaaccaaatttatttttc 745
            ||||| ||||||||| || |||||||||||||| ||||| ||||||||| |||| |||||
Sbjct: 2371 aaacagggcacgctgcggcgtgccctgcgacaa-tttgagaaaaaccaagttta-ttttc 2314

                                                          
Query: 746  aaaaatcattgggcccacccccttttgaaaaacgatgtttgccata 791
            |||||||| |||| |||||||  ||||||||||||| |||||||||
Sbjct: 2313 aaaaatca-tgggtccacccc--tttgaaaaacgat-tttgccata 2272


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,162
Number of Sequences: 1807
Number of extensions: 18162
Number of successful extensions: 1762
Number of sequences better than 1.0e-20: 1
length of query: 973
length of database: 10,358,551
effective HSP length: 16
effective length of query: 957
effective length of database: 10,329,639
effective search space: 9885464523
effective search space used: 9885464523
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)