BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC42ZA11FM1.SCF screened BAC_end (973 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1484 1229 0.0 >3x_Contig1484 Length = 9345 Score = 1229 bits (620), Expect = 0.0 Identities = 690/706 (97%), Gaps = 7/706 (0%) Strand = Plus / Minus Query: 87 cttgctgaaaagagaattcaataaaaaagataaatcagaatcgtactgtctaggtactgt 146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2971 cttgctgaaaagagaattcaataaaaaagataaatcagaatcgtactgtctaggtactgt 2912 Query: 147 ctctttgtcactcataccgggggtcttacttcccgtcataaacacggaccaaagaatttg 206 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2911 ctctttgtcactcataccgggggtcttacttcccgtcataaacacggaccaaagaatttg 2852 Query: 207 ttcatcattgaaatagtaaactttgaagaattctcttattcaaaaaactgcttgatgcca 266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2851 ttcatcattgaaatagtaaactttgaagaattctcttattcaaaaaactgcttgatgcca 2792 Query: 267 ttggaaaaccaccactataattatttcacatacccttcaatgtaagacttgtcagccaag 326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2791 ttggaaaaccaccactataattatttcacatacccttcaatgtaagacttgtcagccaag 2732 Query: 327 aaagtgttcaacttttgcaaggtttcgaccttggagaaatcagagaaagacatcgttaat 386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2731 aaagtgttcaacttttgcaaggtttcgaccttggagaaatcagagaaagacatcgttaat 2672 Query: 387 ggatagttaaacctggtgagagaagaaactaggaaagaatcaattcctcttcttcttctt 446 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2671 ggatagttaaacctggtgagagaagaaactaggaaagaatcaattcctcttcttcttctt 2612 Query: 447 acaaggaacgttgaatcaaattgacgaaaaaaaaatactgaaaagctgatgaaaaactct 506 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2611 acaaggaacgttgaatcaaattgacgaaaaaaaaatactgaaaagctgatgaaaaactct 2552 Query: 507 aattcgaaaagntccaatatatatatatatatatttatgagatatatgatatgtaagacg 566 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2551 aattcgaaaagttccaatatatatatatatatatttatgagatatatgatatgtaagacg 2492 Query: 567 tatgtactatggaattatggcatctacgtgtattcaaagtgcatgcaatgtgcggtggaa 626 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2491 tatgtactatggaattatggcatctacgtgtattcaaagtgcatgcaatgtgcggtggaa 2432 Query: 627 gaaaa-tttttttcttccttgtaagtgcgatgagatagatactgggaaagcaacagcaga 685 ||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct: 2431 gaaaattttttttcttccttgtaagtgcgatgagatagatactggaaaggcaacagcaga 2372 Query: 686 aaacatggcacgctggggggtgccctgcgacaattttgaaaaaaaccaaatttatttttc 745 ||||| ||||||||| || |||||||||||||| ||||| ||||||||| |||| ||||| Sbjct: 2371 aaacagggcacgctgcggcgtgccctgcgacaa-tttgagaaaaaccaagttta-ttttc 2314 Query: 746 aaaaatcattgggcccacccccttttgaaaaacgatgtttgccata 791 |||||||| |||| ||||||| ||||||||||||| ||||||||| Sbjct: 2313 aaaaatca-tgggtccacccc--tttgaaaaacgat-tttgccata 2272 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 18,162 Number of Sequences: 1807 Number of extensions: 18162 Number of successful extensions: 1762 Number of sequences better than 1.0e-20: 1 length of query: 973 length of database: 10,358,551 effective HSP length: 16 effective length of query: 957 effective length of database: 10,329,639 effective search space: 9885464523 effective search space used: 9885464523 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)