BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZA11RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1497 1546 0.0
>3x_Contig1497
Length = 11582
Score = 1546 bits (780), Expect = 0.0
Identities = 845/860 (98%), Gaps = 5/860 (0%)
Strand = Plus / Minus
Query: 44 gctttggctggtcttcgtaaaagacaaggtattgatgttgaagaagagggtgccctagaa 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5551 gctttggctggtcttcgtaaaagacaaggtattgatgttgaagaagagggtgccctagaa 5492
Query: 104 aaggaaggaattgctcaagataaagaaattatgttagcaaatttgaaaatcttaggagag 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5491 aaggaaggaattgctcaagataaagaaattatgttagcaaatttgaaaatcttaggagag 5432
Query: 164 aactctcagttacgcccagaaaatgtgacatttgtcagtaaagagttcgtacaagatacc 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5431 aactctcagttacgcccagaaaatgtgacatttgtcagtaaagagttcgtacaagatacc 5372
Query: 224 gctggtgctaatggagaaacgcaaaagaaatgcaatgaaaatttcatgttagcactagca 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5371 gctggtgctaatggagaaacgcaaaagaaatgcaatgaaaatttcatgttagcactagca 5312
Query: 284 ctttgtcacactgttcttgtggaagaaaacaaagatgatccagaaattatggatttcaag 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5311 ctttgtcacactgttcttgtggaagaaaacaaagatgatccagaaattatggatttcaag 5252
Query: 344 gctcaatctccagacgaagcagctcttgttggtactgcaagagacatgggtttcagcttt 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5251 gctcaatctccagacgaagcagctcttgttggtactgcaagagacatgggtttcagcttt 5192
Query: 404 gttggtagaaccaaaaacggggtaattgtcgatattcagggagttcagaaggaatacaga 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5191 gttggtagaaccaaaaacggggtaattgtcgatattcagggagttcagaaggaatacaga 5132
Query: 464 ttactcaatgtgttggaattcaactctactagaaagagaatgtcatgcattctaaaaatt 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5131 ttactcaatgtgttggaattcaactctactagaaagagaatgtcatgcattctaaaaatt 5072
Query: 524 ccatctgaaaatccaaacgaagaaccaagagctttgctaatctgtaaaggtgcagactcg 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5071 ccatctgaaaatccaaacgaagaaccaagagctttgctaatctgtaaaggtgcagactcg 5012
Query: 584 atcatctattccagactaagtaagaacaatgatgaaaagctactagaaaagacggccttg 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5011 atcatctattccagactaagtaagaacaatgatgaaaagctactagaaaagacggccttg 4952
Query: 644 catttggaacaatatgccacagaatgtttaagaactctatgtattgcccaaagagaattg 703
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 4951 catttggaacaatatgccacagaaggtttaagaactctatgtattgcccaaagagaattg 4892
Query: 704 tcatggaaaagataccaagaatggaacgaaaaacatgagattgcagctgctgcccttgtt 763
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4891 tcatggaaagaataccaagaatggaacgaaaaacatgagattgcagctgctgcccttgtt 4832
Query: 764 gatcgtgaagatgaaatggataa-gtcgctgatgtattcgaacgtgaggaaactttggct 822
|||||||||||||||||||| || |||||||||||| ||||||||||| |||||| |||
Sbjct: 4831 gatcgtgaagatgaaatggaaaaggtcgctgatgtaatcgaacgtgagttaacttt-gct 4773
Query: 823 a-gttgtactgctattgaagatcgtttacaagattgtggtaccagattccattgccacct 881
| || ||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 4772 aggtggtactgctattgaagatcgtttacaagatggt-gtaccagattccattgccacc- 4715
Query: 882 ttaggaaaagctggtatcaa 901
|||||| |||||||||||||
Sbjct: 4714 ttaggagaagctggtatcaa 4695
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7813
Number of Sequences: 1807
Number of extensions: 7813
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)