BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZA12FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig547 1300 0.0
>3x_Contig547
Length = 2052
Score = 1300 bits (656), Expect = 0.0
Identities = 704/715 (98%), Gaps = 4/715 (0%)
Strand = Plus / Plus
Query: 86 cttttgcatgttttgaatcttcgcctttaatgcatattgatttgaagccataataatctt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 cttttgcatgttttgaatcttcgcctttaatgcatattgatttgaagccataataatctt 636
Query: 146 aataatacaatcggtgttgattgaatgtccacagggatacacgaaaaactttctagtctg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 aataatacaatcggtgttgattgaatgtccacagggatacacgaaaaactttctagtctg 696
Query: 206 caagggttgagagcaatacgaacacgatgcgcccggtttcagcttttcataccgatttct 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 caagggttgagagcaatacgaacacgatgcgcccggtttcagcttttcataccgatttct 756
Query: 266 aaataatatgatatcatttttaatctcacttttaatcttaagagaatcgcgaatttcttg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 aaataatatgatatcatttttaatctcacttttaatcttaagagaatcgcgaatttcttg 816
Query: 326 ggaaagtttagtgatttgcatactgtgcttttcaagacttctgacaagttcttccttcaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 ggaaagtttagtgatttgcatactgtgcttttcaagacttctgacaagttcttccttcaa 876
Query: 386 cttatcaatggttacaaactcatcaaatagtggtagcaagtctttcactgacaaaacacc 445
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 cttagcaatggttacaaactcatcaaatagtggtagcaagtctttcactgacaaaacacc 936
Query: 446 ctctgattcttgaataagaagagttagtgtattcttgatatcccgatcttgtttgatcat 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937 ctctgattcttgaataagaagagttagtgtattcttgatatcccgatcttgtttgatcat 996
Query: 506 ggcagcagcaatgtccaaccacaatgttttcttaatatcaaggtcttcaactgtggtagc 565
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 997 ggcagcagcaatgtccaaccacaatgttttcttaatatcagggtcttcaactgtggtagc 1056
Query: 566 taccttcttagcttcttgtagtcgtccatgtttcaatgccaagctaactgcctcttcgta 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1057 taccttcttagcttcttgtagtcgtccatgtttcaatgccaagctaactgcctcttcgta 1116
Query: 626 aagagatatctcagaatatatgcagatagaaaccccatatctctcgtaccttaaactcaa 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1117 aagagatatctcagaatatatgcagatagaaaccccatatctctcgtaccttaaactcaa 1176
Query: 686 tct-agaatgaagtccgtatcaaaatgacctttgctatgcttantgaggaacctgaatga 744
||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 1177 tctaagaatgaagtccgtatcaaaatgacctttgctatgcttagtgaggaa-ctgaatga 1235
Query: 745 cttccctggtctttgtccggccgttttattcacaatcattatgtaaagattagtg 799
||| |||||||||||||| | |||||||| ||||||||| |||||||||| ||||
Sbjct: 1236 ctt-cctggtctttgtcc-gtcgttttatccacaatcatcatgtaaagataagtg 1288
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7010
Number of Sequences: 1807
Number of extensions: 7010
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)