BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC42ZA12RM1.SCF screened BAC_end
         (911 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1703                                                        1076   0.0  

>3x_Contig1703 
          Length = 17919

 Score = 1076 bits (543), Expect = 0.0
 Identities = 568/575 (98%), Gaps = 1/575 (0%)
 Strand = Plus / Minus

                                                                       
Query: 54  aaagacggggcctcttatcttctaagtagttactataatttcactgtgaatcaccattga 113
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 aaagacggggcctcttatcttctaagtagttactataatttcactgtgaatcaccattga 518

                                                                       
Query: 114 tgatgatctcttttcagtttttcaggttaataataagagtcccattttctgcagatatat 173
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tgatgatctcttttcagtttttcaggttaataataagagtcccattttctgcagatatat 458

                                                                       
Query: 174 gtctaaaatgacaaagaataataacaagtaacatggtattgattttttgtaccctccacc 233
           ||||||||||||||||||||||||||||||||||||||||||      ||||||||||||
Sbjct: 457 gtctaaaatgacaaagaataataacaagtaacatggtattgaccgaaggtaccctccacc 398

                                                                       
Query: 234 ttcacgaactgagtaagttgctctcgcaaattgtgccaactggatgtttcacactaacaa 293
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ttcacgaactgagtaagttgctctcgcaaattgtgccaactggatgtttcacactaacaa 338

                                                                       
Query: 294 aaattgaaatcacgtgatattataaacaactcacctttaagtaaattttcacatgtcatt 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aaattgaaatcacgtgatattataaacaactcacctttaagtaaattttcacatgtcatt 278

                                                                       
Query: 354 tttcatgtgacttaaaacccttcgttccatgaaattctgatttgcagaaacatctagcgc 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tttcatgtgacttaaaacccttcgttccatgaaattctgatttgcagaaacatctagcgc 218

                                                                       
Query: 414 aggacacaaatcgaatcttcctaacatatccaggaataaa-cagaatataaatataatag 472
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 217 aggacacaaatcgaatcttcctaacatatccaggaataaagcagaatataaatataatag 158

                                                                       
Query: 473 gtttccaactaccaacttttcattattctgttctcagaacatcgaacttttattgtcctt 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 gtttccaactaccaacttttcattattctgttctcagaacatcgaacttttattgtcctt 98

                                                                       
Query: 533 tcaaacttataagatatactttgacttatacggtaatctaatagggtttgtcgtaattgt 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  tcaaacttataagatatactttgacttatacggtaatctaatagggtttgtcgtaattgt 38

                                              
Query: 593 agttctaagttgttctaaaaacagctaacataata 627
           |||||||||||||||||||||||||||||||||||
Sbjct: 37  agttctaagttgttctaaaaacagctaacataata 3


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7506
Number of Sequences: 1807
Number of extensions: 7506
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)