BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC42ZB02FM1.SCF screened BAC_end
         (947 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1608                                                        1306   0.0  

>3x_Contig1608 
          Length = 13037

 Score = 1306 bits (659), Expect = 0.0
 Identities = 741/759 (97%), Gaps = 7/759 (0%)
 Strand = Plus / Plus

                                                                        
Query: 92   atctggtttcactacggtatccttcttgattggtgaaactatcttttctggtgacaggtt 151
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2354 atctggtttcactacggtatccttcttgattggtgaaactatcttttctggtgacaggtt 2413

                                                                        
Query: 152  aaattgggtgacagaatcctctggttcttcgaccctaccctcggtatcagttacctgcac 211
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2414 aaattgggtgacagaatcctctggttcttcgaccctaccctcggtatcagttacctgcac 2473

                                                                        
Query: 212  taattccaatacaaccccatcttttgttatttcaaagagaatggggtcaccaggttggca 271
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2474 taattccaatacaaccccatcttttgttatttcaaagagaatggggtcaccaggttggca 2533

                                                                        
Query: 272  aaaccagattcttatcatgtcatttgttttccaacaattaagtccatttaagaatacttt 331
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2534 aaaccagattcttatcatgtcatttgttttccaacaattaagtccatttaagaatacttt 2593

                                                                        
Query: 332  gaaatctcgtaatttgaacgtaatgctcttcttaatactttgtgatctgcttgaaggtct 391
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2594 gaaatctcgtaatttgaacgtaatgctcttcttaatactttgtgatctgcttgaaggtct 2653

                                                                        
Query: 392  cgaaccgtcgtttttttctgttgaaaatatgcagtaatgttctagatcatttgcgctaca 451
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2654 cgaaccgtcgtttttttctgttgaaaatatgcagtaatgttctagatcatttgcgctaca 2713

                                                                        
Query: 452  tgtattcgttactgtaactgcttgtttgaggtacccttgacttttcatgttgtacacggc 511
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2714 tgtattcgttactgtaactgcttgtttgaggtacccttgacttttcatgttgtacacggc 2773

                                                                        
Query: 512  ttttgtaaatcctattatggctagagtatgtctcgtcaattccaattttatttcctcgat 571
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2774 ttttgtaaatcctattatggctagagtatgtctcgtcaattccaattttatttcctcgat 2833

                                                                        
Query: 572  cacattatacataatagagtcaatgaagttttctagtattgattgatcaaaacttaag-a 630
            ||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||| |
Sbjct: 2834 cacattagacataatagagtcaatgaagtttcttagtattgattgatcaaaacttaagaa 2893

                                                                        
Query: 631  gttgatttcgtcgttacccgtc-acggtgtatttttcactgtgctcacaatattgtgttc 689
            |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 2894 gttgatttcgtcgttaaccgtcaacggtgtatttttcactgtgctcacaatattgtgttc 2953

                                                                        
Query: 690  attggcgatacctctatt-aacatatcatgttctaattctggttgtaaagatttgaaata 748
            |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2954 attggcgatacctctattaaacatatcatgttctaattctgtttgtaaagatttgaaata 3013

                                                                        
Query: 749  atccactatccga-gatcttatgattcgccccttacttttgttgttggatactgaaaggg 807
            |||||||| |||| ||||| |||| ||  |||||||||||||||||| ||||||||| ||
Sbjct: 3014 atccactaaccgaggatctaatga-tctgcccttacttttgttgttgtatactgaaa-gg 3071

                                                   
Query: 808  aatttttgtttatatttcagacctaatattgatctgaac 846
            |||||||||||||||||||||| ||||| ||||||||||
Sbjct: 3072 aatttttgtttatatttcagacttaata-tgatctgaac 3109


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7340
Number of Sequences: 1807
Number of extensions: 7340
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)