BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZB02RM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1641 1643 0.0
>3x_Contig1641
Length = 13261
Score = 1643 bits (829), Expect = 0.0
Identities = 875/884 (98%), Gaps = 5/884 (0%)
Strand = Plus / Plus
Query: 44 gctttatgtaattgagactaca-ccgagagaacgaagtcacgtgatggacatctggtgat 102
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 6701 gctttatgtaattgagactacaaccgagagaacgaagtcacgtgatggacatctggtgat 6760
Query: 103 tccaacgctagatacagcacactgtgtcctaatattgccaaagatcagctagaaatccca 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6761 tccaacgctagatacagcacactgtgtcctaatattgccaaagatcagctagaaatccca 6820
Query: 163 atttcaagctgtttagcagtccacagatagtatggattggataagtccccccaaatccag 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6821 atttcaagctgtttagcagtccacagatagtatggattggataagtccccccaaatccag 6880
Query: 223 atgaaagccgtagggtccctgctatatcacttctttccattgctcagatgttgaatttgg 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6881 atgaaagccgtagggtccctgctatatcacttctttccattgctcagatgttgaatttgg 6940
Query: 283 tgaaacctttgtcacaagttttcggcaattttgttgttttgaaacgaaaatattaaaagg 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6941 tgaaacctttgtcacaagttttcggcaattttgttgttttgaaacgaaaatattaaaagg 7000
Query: 343 aagagttgtttatttcgccacctcaaagatatcagcggatcaagatagcaattggttgga 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7001 aagagttgtttatttcgccacctcaaagatatcagcggatcaagatagcaattggttgga 7060
Query: 403 agaaggtggtacaataagctgctgtactgtttaattgaagtttgtttctccaagaatttc 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7061 agaaggtggtacaataagctgctgtactgtttaattgaagtttgtttctccaagaatttc 7120
Query: 463 aatacagtcgacacatcctttttattggttgaaaggacggacgaagagactaataacaag 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7121 aatacagtcgacacatcctttttattggttgaaaggacggacgaagagactaataacaag 7180
Query: 523 cctttttttaatagaaacaatgggtcaaattttgtctaatcctgtaattgataaggaaca 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7181 cctttttttaatagaaacaatgggtcaaattttgtctaatcctgtaattgataaggaaca 7240
Query: 583 acattctggtagtgatgttntgactgcttttgggttatgtgctatgcaaggatggcgtat 642
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 7241 acattctggtagtgatgttttgactgcttttgggttatgtgctatgcaaggatggcgtat 7300
Query: 643 gtctatggaagattctcacattgttgatttgaacatttctgatgatgagaaggagcattt 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7301 gtctatggaagattctcacattgttgatttgaacatttctgatgatgagaaggagcattt 7360
Query: 703 ggcgtactactgtgtgtttgacggacatggtggttcaaagcg-tgctcagttctgtggat 761
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 7361 ggcgtactactgtgtgtttgacggacatggtggttc-aagcgttgctcagttctgtggat 7419
Query: 762 cacagttctccaagattttacaaaaacaggatgctttcaagaag-agtcttacaacgagg 820
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 7420 cacagttctccaagattttacaaaaacaggatgctttcaagaagaagtcttacaacgagg 7479
Query: 821 ctcttattcaatcttttattgcgacagatgaagaagcttttaaaggatcccgtgttagcg 880
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 7480 ctcttattcaatcttttattgcgacagatgaag-agcttttgaaggatcccgtgttagcg 7538
Query: 881 aacgaccatattggatgcactgcaacgactttattattctctaa 924
|||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 7539 aacgaccatagtggatgcactgcaacgactttattaatctctaa 7582
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7489
Number of Sequences: 1807
Number of extensions: 7489
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)