BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZB03FM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1335 938 0.0
>3x_Contig1335
Length = 8696
Score = 938 bits (473), Expect = 0.0
Identities = 599/633 (94%), Gaps = 6/633 (0%)
Strand = Plus / Minus
Query: 86 catattaatcagattttctcacttaaaacactaagatactatgtcaattcctagtaaatc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5995 catattaatcagattttctcacttaaaacactaagatactatgtcaattcctagtaaatc 5936
Query: 146 ctactaatttgcttctgaactttattgatctcgcgtaaacacttacctgaggacatatgc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5935 ctactaatttgcttctgaactttattgatctcgcgtaaacacttacctgaggacatatgc 5876
Query: 206 ttcgatcattatacagatctctttgtattctgtacttttccaaggtttcgacacgatttt 265
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5875 ttcgatcattagacagatctctttgtattctgtacttttccaaggtttcgacacgatttt 5816
Query: 266 tttcgattctaaatagagaatttccgaaaacggtagataaacgtgactatcatgtggata 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5815 tttcgattctaaatagagaatttccgaaaacggtagataaacgtgactatcatgtggata 5756
Query: 326 gaaatggggaaggtgacaacacttggattcgggattcggtgaggaaccacaatataccta 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5755 gaaatggggaaggtgacaacacttggattcgggattcggtgaggaaccacaatataccta 5696
Query: 386 gaaaagtatcctagattcattgaacaacaagtagttcttaatgattaaattacggtatac 445
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 5695 gaaaagtatcctagattcattgaacaacaggtagttcttaatgattaaattacggtatac 5636
Query: 446 atttttccatgttcacgtgactcataactgtcatgtgaccgacacatagaatacactact 505
||||| | |||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 5635 attttccaatgttcacgtgactcaaaactgtcatgtgaccgacacaaagaatacactact 5576
Query: 506 tatattttcccattanggagaaacgtaaacattggaatagtgatataaagtcatagaaaa 565
|| |||| || |||| |||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 5575 tagatttcccaatta-ggagaaacgtaaacattgaaatagtgatataaagtcatag-aaa 5518
Query: 566 tgc-atgctacatgggtagaaa-cacattacagggttcatcacgacaacctat-aaactg 622
||| |||||||||| ||||||| |||||||||| ||||||||||||||||||| ||||||
Sbjct: 5517 tgcaatgctacatgtgtagaaaccacattacagtgttcatcacgacaacctataaaactg 5458
Query: 623 ctattcagggaccagggtccttatttagatcaaaccgattcagccctatttcaaagtagc 682
||||||||| ||| ||| || | | ||||||||| ||| || |||| |||||||||||
Sbjct: 5457 ctattcaggagcca-ggtactaaataagatcaaacagatacaagcctagttcaaagtagc 5399
Query: 683 taaaagaataatgaccgcccggccatttcaacc 715
| ||||||||||||| ||| | | |||||||||
Sbjct: 5398 tcaaagaataatgactgccggccaatttcaacc 5366
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6694
Number of Sequences: 1807
Number of extensions: 6694
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)