BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZB03RM1.SCF screened BAC_end
(899 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig441 991 0.0
>3x_Contig441
Length = 2196
Score = 991 bits (500), Expect = 0.0
Identities = 560/576 (97%), Gaps = 3/576 (0%)
Strand = Plus / Plus
Query: 43 agcttttcaagaatttggcagttctggccttctttggagctatgatggtattagtgaaag 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1447 agcttttcaagaatttggcagttctggccttctttggagctatgatggtattagtgaaag 1506
Query: 103 attcaatctctggagttattatcactccaattttgctcaaaattaaaatgtctaaattag 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1507 attcaatctctggagttattatcactccaattttgctcaaaattaaaatgtctaaattag 1566
Query: 163 ataaattctcatggcagttggttaacactgcctttatcttgtatggtttatgcgatatat 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1567 ataaattctcatggcagttggttaacactgcctttatcttgtatggtttatgcgatatat 1626
Query: 223 tcaagtaagaaaccatttcgtctgcctttgaatctagagctttctgcttctttatctcct 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1627 tcaagtaagaaaccatttcgtctgcctttgaatctagagctttctgcttctttatctcct 1686
Query: 283 gaatcgcctccgggagtaattctggggatcttttacgtttattgatcttctggaactcgt 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1687 gaatcgcctccgggagtaattctggggatcttttacgtttattgatcttctggaactcgt 1746
Query: 343 ttaatgactctatatcctcgtgtaatttttctgccgcttttgccttcgctcttctcctgg 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1747 ttaatgactctatatcctcgtgtaatttttctgccgcttttgccttcgctcttctcctgg 1806
Query: 403 tgtcactcattggggttaatggctgagatgggttttcgaggctctcatcagcagataaag 462
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1807 tgtcactcattggggttaatggctgagatgggttttcgaggctctcagcagcagataaag 1866
Query: 463 atgataactcccttgatgttattggtgtagcaatactgcctttatcattttttgattcta 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1867 atgataactcccttgatgttattggtgtagcaatactgcctttatcattttttgattcta 1926
Query: 523 tagttccatttctcttgatgtacgaacattttcggtgatttcccagtggtacttgctttt 582
|||||||| |||||||||||||| |||||| |||||||| | ||| |||||| | |||
Sbjct: 1927 tagttcca-ttctcttgatgtacagacatttccggtgattccacaggtgtactttc-ttt 1984
Query: 583 tgccttttcttg-aactcttctagaaatttagttaa 617
||||| |||||| ||||||| |||||||||||||
Sbjct: 1985 tgcctcttcttgtaactctttaggaaatttagttaa 2020
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,761
Number of Sequences: 1807
Number of extensions: 13761
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 899
length of database: 10,358,551
effective HSP length: 16
effective length of query: 883
effective length of database: 10,329,639
effective search space: 9121071237
effective search space used: 9121071237
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)