BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZB04FM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1038 1237 0.0
>3x_Contig1038
Length = 5718
Score = 1237 bits (624), Expect = 0.0
Identities = 757/792 (95%), Gaps = 7/792 (0%)
Strand = Plus / Plus
Query: 86 tttcatgcacacagcaccattcctcacttgtgaagagaaagtttatgaacccccggagga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4758 tttcatgcacacagcaccattcctcacttgtgaagagaaagtttatgaacccccggagga 4817
Query: 146 acaagagcaaggatctcttgtagaaatgggagaaacggccctagctcaaaacttgtctca 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4818 acaagagcaaggatctcttgtagaaatgggagaaacggccctagctcaaaacttgtctca 4877
Query: 206 tcagcaaactctagccagtctagtcgctttccagcaaataaaatcaaaactaacagattt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4878 tcagcaaactctagccagtctagtcgctttccagcaaataaaatcaaaactaacagattt 4937
Query: 266 cctacgaccatttgcggaaaacgataaggtcgttagtgaatctgatatcaagcagttttt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4938 cctacgaccatttgcggaaaacgataaggtcgttagtgaatctgatatcaagcagttttt 4997
Query: 326 tgatactcagaaaaaatgaactcttgttacgacatttaatcatcataaactttaaatgtg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4998 tgatactcagaaaaaatgaactcttgttacgacatttaatcatcataaactttaaatgtg 5057
Query: 386 gatatgttatatacattgctacatttagaagaatttattgtcaataagagggatatctcg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5058 gatatgttatatacattgctacatttagaagaatttattgtcaataagagggatatctcg 5117
Query: 446 agcttctactctaaacttttcatttacacatgtatgtattcaaaaaggtgttagttttat 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5118 agcttctactctaaacttttcatttacacatgtatgtattcaaaaaggtgttagttttat 5177
Query: 506 ataacatatgagataacttgcatatccgaatagacttcattttagtagatataagagttt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5178 ataacatatgagataacttgcatatccgaatagacttcattttagtagatataagagttt 5237
Query: 566 ttcaaagtgaattgtctatggtgccacaatgatggccttcaattcagtgtaatcatcgat 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5238 ttcaaagtgaattgtctatggtgccacaatgatggccttcaattcagtgtaatcatcgat 5297
Query: 626 accatacttagaaatttctttacctaaccctgaattctt-acaccacccgaaaggtactg 684
||||||||||||| |||||||||||| ||||||||||| |||||| |||||||||||||
Sbjct: 5298 accatacttagaaccttctttacctaaacctgaattcttaacacca-ccgaaaggtactg 5356
Query: 685 caggttcactgatttctccagtgttgac-ccaaacataccaac-tttagtttctttgc-g 741
|||||||||||||||||||||||||||| |||| ||||||||| |||||||||| ||| |
Sbjct: 5357 caggttcactgatttctccagtgttgacaccaaccataccaacatttagtttctctgcgg 5416
Query: 742 cattcaaaatgtggct-atattttgactgtggaagtaacctgctaaacgcacttcc-tgg 799
||| |||||| ||| ||||||||||||| |||||| |||||||||| || ||| ||
Sbjct: 5417 catcaaaaatggtgctaatattttgactgtagaagtagcctgctaaaccgacatccgtgt 5476
Query: 800 cattagcccgtttgatgacttcttccccattccttaacttatttaaggggcccccaggcc 859
||||||| |||||||||||||| ||| ||| | | |||||| |||| || | |||| |
Sbjct: 5477 cattagcacgtttgatgacttcatccacatccttaaacttaattaatggagcaacaggtc 5536
Query: 860 caaagatttctt 871
||||||||||||
Sbjct: 5537 caaagatttctt 5548
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6512
Number of Sequences: 1807
Number of extensions: 6512
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)