BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZB04RM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1337 1518 0.0
>3x_Contig1337
Length = 7771
Score = 1518 bits (766), Expect = 0.0
Identities = 828/841 (98%), Gaps = 7/841 (0%)
Strand = Plus / Plus
Query: 42 gcttgtacgttttattcacttttttataagcacttcttcgcagttttctgtatttagttt 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3228 gcttgtacgttttattcacttttttataagcacttcttcgcagttttctgtatttagttt 3287
Query: 102 ttagagaaacaatattggaacaagtgtcagacacattgcttgagctgttggttggttttt 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3288 ttagagaaacaatattggaacaagtgtcagacacattgcttgagctgttggttggttttt 3347
Query: 162 gtttgcactcgcagtatctatttgaattctcatagacgtttttcaaagaaaataaagttg 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3348 gtttgcactcgcagtatctatttgaattctcatagacgtttttcaaagaaaataaagttg 3407
Query: 222 aggtgattttttgagaagtgaaaccaagggaacaaacctggaataagtggggaacaaaac 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3408 aggtgattttttgagaagtgaaaccaagggaacaaacctggaataagtggggaacaaaac 3467
Query: 282 acaagaacggttttatttgtagatattggtttatcagcagtactgctctgctatacaatt 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3468 acaagaacggttttatttgtagatattggtttatcagcagtactgctctgctatacaatt 3527
Query: 342 ttaactatttggtaaaaataagaccagaataacaatatattataacatattcagaaacta 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3528 ttaactatttggtaaaaataagaccagaataacaatatattataacatattcagaaacta 3587
Query: 402 gaactacatgtccgtggttgcaattaaaaacgctgtgtcaaaactcgtagcgaaaaatca 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3588 gaactacatgtccgtggttgcaattaaaaacgctgtgtcaaaactcgtagcgaaaaatca 3647
Query: 462 ggaagttccattactatcatccgatagttctaattccaattcgaattctaccactaattt 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3648 ggaagttccattactatcatccgatagttctaattccaattcgaattctaccactaattt 3707
Query: 522 gaatagtcatcgatactcggcttcaccacaggatggcgatatagaatcctcaaagcatac 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3708 gaatagtcatcgatactcggcttcaccacaggatggcgatatagaatcctcaaagcatac 3767
Query: 582 aggtgggtttgacgattatgacaatgaggatgatggtacgtctggattgttcggtaagat 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3768 aggtgggtttgacgattatgacaatgaggatgatggtacgtctggattgttcggtaagat 3827
Query: 642 tgatccaagagttatgtccgatatgattatcggactcagtgatggtttgacggttccttt 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3828 tgatccaagagttatgtccgatatgattatcggactcagtgatggtttgacggttccttt 3887
Query: 702 cgcgttgaccgcaggtctttcctcgttgggagattccaagttggtgattacaggtggggt 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 3888 cgcgttgaccgcaggtctttcctcgttgggagattccaagttggtgattacaggt-gggt 3946
Query: 762 tcgcgggaattgatctctggtgctatatctatgggtcttggttggggtatttgggtgcta 821
|||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 3947 tcgc-ggaattgatctctggtgctatatctatgggtcttggt--ggttatttgggtgcta 4003
Query: 822 attctg-aagtgattactataaatcgggaggtgttcgcagaatataaggaaattttatag 880
| |||| |||||||||||||||||| ||||||| ||||| | | |||||||||||||||
Sbjct: 4004 aatctgaaagtgattactataaatc-ggaggtg-tcgcaagaaaaaaggaaattttatag 4061
Query: 881 c 881
|
Sbjct: 4062 c 4062
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6826
Number of Sequences: 1807
Number of extensions: 6826
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)