BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZB05FM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1563 1368 0.0
>3x_Contig1563
Length = 10839
Score = 1368 bits (690), Expect = 0.0
Identities = 783/802 (97%), Gaps = 9/802 (1%)
Strand = Plus / Minus
Query: 86 attaaatcaaatatgaacggttcagaaccgaattctacagagttaaggcacgatgtcgag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5498 attaaatcaaatatgaacggttcagaaccgaattctacagagttaaggcacgatgtcgag 5439
Query: 146 gcagttaccatactaatatctaaacttcaagtttactcgcagtttgatacacaaactcca 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5438 gcagttaccatactaatatctaaacttcaagtttactcgcagtttgatacacaaactcca 5379
Query: 206 acagagagagcttttccctctatgttcagctccgattctgatataagcgactcaattgac 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5378 acagagagagcttttccctctatgttcagctccgattctgatataagcgactcaattgac 5319
Query: 266 tctgatgtcggagatcagctaaagagacggtcttcttcaatactgcgcaaaatgtttaat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5318 tctgatgtcggagatcagctaaagagacggtcttcttcaatactgcgcaaaatgtttaat 5259
Query: 326 aggtcaaagaaactactgccaaaactacacaagaggtgaaacgtatgagcagttgtgctg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5258 aggtcaaagaaactactgccaaaactacacaagaggtgaaacgtatgagcagttgtgctg 5199
Query: 386 ctggataatggaggagcttctcttttcatactactccgtcttatatcaaaatttctacgc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5198 ctggataatggaggagcttctcttttcatactactccgtcttatatcaaaatttctacgc 5139
Query: 446 tcacttctgagcttttcagcagggaaggtagaaaaaaattttgacacattgacgaaaaca 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5138 tcacttctgagcttttcagcagggaaggtagaaaaaaattttgacacattgacgaaaaca 5079
Query: 506 gattgataacacttaagacctttgataaagctttgaatgacacctactctttgatttcat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5078 gattgataacacttaagacctttgataaagctttgaatgacacctactctttgatttcat 5019
Query: 566 attggatttttcactatataaagac-actggggtgatatatccagagaaccaattaggta 624
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 5018 attggatttttcactatat-aagacaactggggtgatatatccagagaaccaattaggta 4960
Query: 625 ttggaatagtttatacctgattcactgaaagatggctgacgttaagattcaaactttacc 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 4959 ttggaatagtttatacctgattcactgaaagatggctgacgttaagattcaaactctacc 4900
Query: 685 aaccgacttttaggccaaccattatgagattgaattgagtgagtttagatgctgagcaca 744
|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 4899 aaccgactttagggccaaccattatgagattgaattgagtgag-ttagatgctgagcaca 4841
Query: 745 atttcatttatcggatccggggcgtattatttatgtccactgttaatgccaatgacatga 804
| |||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||
Sbjct: 4840 a-ttcatttatcggatcc-gtgcgtatta-ttatgtccactgttaatgccaatgacatga 4784
Query: 805 tttcattgaatttgagggacattgaaatcgtttctgggggtgtttgaacctgaaaaaggg 864
||||||||||| ||||||||||||| ||||||||| | |||| ||||| |||||| ||||
Sbjct: 4783 tttcattgaatatgagggacattgagatcgtttct-gcggtggttgaa-ctgaaagaggg 4726
Query: 865 gtctgggttctttgggaatgaa 886
||||| | ||||||||||||||
Sbjct: 4725 gtctgtg-tctttgggaatgaa 4705
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6692
Number of Sequences: 1807
Number of extensions: 6692
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)