BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZB05RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig893 1441 0.0
>3x_Contig893
Length = 2804
Score = 1441 bits (727), Expect = 0.0
Identities = 765/774 (98%), Gaps = 4/774 (0%)
Strand = Plus / Plus
Query: 43 ctttggaaagatcaaaaccgtatacagcgagaatggtaaagcataaggaaatttatgatt 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2025 ctttggaaagatcaaaaccgtatacagcgagaatggtaaagcataaggaaatttatgatt 2084
Query: 103 agaatacacctctgcgtaatggttggcggtatcatgtatgtatgaagggtatgtatatat 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2085 agaatacacctctgcgtaatggttggcggtatcatgtatgtatgaagggtatgtatatat 2144
Query: 163 gtacggctggatggatattgtgaatgaggtccctgttgcaatttttctcatttcttccat 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2145 gtacggctggatggatattgtgaatgaggtccctgttgcaatttttctcatttcttccat 2204
Query: 223 ggtgatttgaaagcccaattcccgagacgatttccctttggattggtggcatctttggtc 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2205 ggtgatttgaaagcccaattcccgagacgatttccctttggattggtggcatctttggtc 2264
Query: 283 caagtcttacctgtgcgtaattcatagttctctttttctaattcgtcaaggcgtgttctg 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2265 caagtcttacctgtgcgtaattcatagttctctttttctaattcgtcaaggcgtgttctg 2324
Query: 343 agctcttgattttcgtccataacttccagatttctttccattgttctattcaaatctgct 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2325 agctcttgattttcgtccataacttccagatttctttccattgttctattcaaatctgct 2384
Query: 403 ttcaaatctgtgggaatttcagcatctggattaggtaacgtttgtttataaagttcacgt 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2385 ttcaaatctgtgggaatttcagcatctggattaggtaacgtttgtttataaagttcacgt 2444
Query: 463 tccagttgtttcttcaaatcttctatctctagtaataaatccttattttcgtcctgaaga 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2445 tccagttgtttcttcaaatcttctatctctagtaataaatccttattttcgtcctgaaga 2504
Query: 523 gtttccatccgaagtctgttttcaattagttcattggcaatagtgatatgctctctgttt 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2505 gtttccatccgaagtctgttttcaattagttcattggcaatagtgatatgctctctgttt 2564
Query: 583 aatagcgaatagtcattttctaa-tttcttcaactctttttgaagctgtctgtttttaat 641
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 2565 aatagcgaatagtcattttctaattttcttcaactctttttgaagctgtctgttttaaat 2624
Query: 642 tctttgttcctcatattgttgttccttttccgtttccaacttgtgaatctcatcgtactc 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2625 tctttgttcctcatattgttgttccttttccgtttccaacttgtgaatctcatcgtactc 2684
Query: 702 tttcacgtaacgctcc--attgcaatggagttaattttgattttccacgaatcagagatg 759
|||||||||||||||| |||||||||||||||| |||||||| | ||||||||||||||
Sbjct: 2685 tttcacgtaacgctccaaattgcaatggagttaa-tttgatttccaacgaatcagagatg 2743
Query: 760 aatctatcaatatcgtactcttctgggttcttcttagaagcatagtgttggaaa 813
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 2744 aatctatcaatatcgtactcttctggggtctccttagaagcatagtgttggaaa 2797
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8430
Number of Sequences: 1807
Number of extensions: 8430
Number of successful extensions: 79
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)