BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZB06FM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1801 1027 0.0
>3x_Contig1801
Length = 57606
Score = 1027 bits (518), Expect = 0.0
Identities = 590/605 (97%), Gaps = 7/605 (1%)
Strand = Plus / Minus
Query: 90 ttaggtgtggatcacagtatcgagaataatttacaaacagagactaatagattgtccaag 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41522 ttaggtgtggatcacagtatcgagaataatttacaaacagagactaatagattgtccaag 41463
Query: 150 actttgactaagttttgggaacaagtgagtttataagaaacccccgaaaatgttaccatt 209
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 41462 actttgactaagttttgggaacaagtgagtttagaagaaacccccgaaaatgttaccatt 41403
Query: 210 aaattggattctaagcctttgcgtactcctttggggaaccctttaactttaccacaatct 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41402 aaattggattctaagcctttgcgtactcctttggggaaccctttaactttaccacaatct 41343
Query: 270 cgtaagcttttatcggttatggttctcaatgaatggagtaatcttcctagtttatctgtc 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41342 cgtaagcttttatcggttatggttctcaatgaatggagtaatcttcctagtttatctgtc 41283
Query: 330 aagccttatgttttacctttaacctctttagtttcccgttgcattgatttggaaaaggcc 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41282 aagccttatgttttacctttaacctctttagtttcccgttgcattgatttggaaaaggcc 41223
Query: 390 aatgaggacggtgtagacccagaacttgttgcgaagataggtgggaacagagaaaagtta 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41222 aatgaggacggtgtagacccagaacttgttgcgaagataggtgggaacagagaaaagtta 41163
Query: 450 actgaaggtcttttgagatatttagatactgatactctattagtgttttctccagcaaat 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41162 actgaaggtcttttgagatatttagatactgatactctattagtgttttctccagcaaat 41103
Query: 510 gaatacgataggtgcgct-agataggctcaagatgatttgtatctaccgataatttccgg 568
|||||||| ||||||||| ||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 41102 gaatacga-aggtgcgctaagaaaggctcaagatgaattgtatctaccgataatttccgg 41044
Query: 569 tgtcgaaaagttcctatctcnaat-aattaagattagaaagaagtc-aatttcaaata-t 625
|||||||||||||||||||| ||| ||| ||||| ||||||||||| |||| |||||| |
Sbjct: 41043 tgtcgaaaagttcctatctcaaataaataaagataagaaagaagtcaaattacaaatatt 40984
Query: 626 ggacgctgatttacatggattgagaggt-acgcccaaagtggagagacccga-aagtagc 683
|||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||
Sbjct: 40983 ggacgctgatttacatggattgagaggtaacgcccaaagtggagagaccagagaagtagc 40924
Query: 684 taaac 688
|||||
Sbjct: 40923 taaac 40919
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6731
Number of Sequences: 1807
Number of extensions: 6731
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)