BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZB06RM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig187 987 0.0
3x_Contig1254 295 8e-80
>3x_Contig187
Length = 1332
Score = 987 bits (498), Expect = 0.0
Identities = 516/522 (98%)
Strand = Plus / Plus
Query: 44 gcttctttatcataaatgacccatcaacacctttatccgccccgactaatagaatattgg 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 gcttctttatcataaatgacccatcaacacctttatccgccccgactaatagaatattgg 644
Query: 104 agcgagtattcttcgagaggaagtcacttatttcccagggttgttctttcatgattgtca 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 agcgagtattcttcgagaggaagtcacttatttcccagggttgttctttcatgattgtca 704
Query: 164 agatcatttgtgataatccatctttcgcatctccgacaagtaaaccctccttaaactcag 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 agatcatttgtgataatccatctttcgcatctccgacaagtaaaccctccttaaactcag 764
Query: 224 taaatcgttcggatagttgcggttgcgtcctgagaaggtctatattcgatctgatcattt 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 taaatcgttcggatagttgcggttgcgtcctgagaaggtctatattcgatctgatcattt 824
Query: 284 tccactcttcgactgttcgtgtactttccattgaatacatctggagttccattaaacgtg 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 tccactcttcgactgttcgtgtactttccattgaatacatctggagttccattaaacgtg 884
Query: 344 cggcaaaagagagcctatcattctctaaaaacattgggccaaaagcacaaaacattaagc 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 cggcaaaagagagcctatcattctctaaaaacattgggccaaaagcacaaaacattaagc 944
Query: 404 ggattagtacagacaaaattttattcggtttattgggcttgctgttaacaagttcgtctg 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945 ggattagtacagacaaaattttattcggtttattgggcttgctgttaacaagttcgtctg 1004
Query: 464 aattttcaagtacgtaccgaaatactgtcaaaaactcattcacttcaacatcataaaacc 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 aattttcaagtacgtaccgaaatactgtcaaaaactcattcacttcaacatcataaaacc 1064
Query: 524 aatgctttttgatacgcacccattctaaaagctcgaatatct 565
||| |||||| |||| |||||||||||| | ||| |||||||
Sbjct: 1065 aattcttttttatactcacccattctaatatctctaatatct 1106
>3x_Contig1254
Length = 5494
Score = 295 bits (149), Expect = 8e-80
Identities = 286/315 (90%), Gaps = 14/315 (4%)
Strand = Plus / Plus
Query: 600 tattgctgattcctgttcaagtacaagtgactgtatcttcgatatctcggtagacatagt 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 6 tattgctgattcctgttcaagtacaagtgactgtatcttcgatatctcggtagacattgt 65
Query: 660 ncccagcttctactttttagttcttccagcgttttttagcaattcntcatttttcgagaa 719
|||||||||||||||| ||||| ||||||||||| |||||||| ||||||| ||||||
Sbjct: 66 -cccagcttctacttttaggttct-ccagcgttttt-agcaattcttcatttt-cgagaa 121
Query: 720 ttatactttcagaagaatttagaagcccccatagtctgttttctaggtccctcaatctaa 779
| |||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||
Sbjct: 122 tattactttcagaagaatttagaagccccaatagtctgtttcctagttccctcaatctaa 181
Query: 780 gctgacaaggttgagtccctcttcaagaagtagcttttctttcattcttggttgggaggt 839
|||||| ||||||||||| || |||||||||||| |||||||||||| ||| | | ||||
Sbjct: 182 gctgac-aggttgagtccttc-tcaagaagtagc-tttctttcattc-tggattgtaggt 237
Query: 840 agctcatattgtcaggatatctttggtaggttctgagaattcaagggttgccttttgtta 899
||||||| ||||||||||||||| ||||| |||||| |||||| |||||||||||||||
Sbjct: 238 agctcat-ttgtcaggatatctt--gtagggtctgag-attcaa-ggttgccttttgtta 292
Query: 900 ttaataaagttgaac 914
|| |||||||||||
Sbjct: 293 -tagtaaagttgaac 306
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5956
Number of Sequences: 1807
Number of extensions: 5956
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 2
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)