BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZB07RM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1652 1360 0.0
>3x_Contig1652
Length = 14842
Score = 1360 bits (686), Expect = 0.0
Identities = 803/829 (96%), Gaps = 10/829 (1%)
Strand = Plus / Minus
Query: 44 gcttaacggatctcgataattgtttcattgtctaacttgtgtagagagcaagttattgaa 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4827 gcttaacggatctcgataattgtttcattgtctaacttgtgtagagagcaagttattgaa 4768
Query: 104 aaagtttaggagagaccgaaaagaggaaatatttaacaatgctttctagtataagaccgg 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4767 aaagtttaggagagaccgaaaagaggaaatatttaacaatgctttctagtataagaccgg 4708
Query: 164 gtaccgtggttctatctcgtactttcaagcagagcttggctagctataggggtgttactg 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4707 gtaccgtggttctatctcgtactttcaagcagagcttggctagctataggggtgttactg 4648
Query: 224 ctgttagtttgtattctacaaataattctgcacaaaagtccgattcaaccaaagaaacca 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4647 ctgttagtttgtattctacaaataattctgcacaaaagtccgattcaaccaaagaaacca 4588
Query: 284 catccactgaaaagggcaaaagcgttgcaccagaagacgttagaactaagagacgtgaat 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4587 catccactgaaaagggcaaaagcgttgcaccagaagacgttagaactaagagacgtgaat 4528
Query: 344 tatccagttccaagtacgaatctgcatcatatncaacttccaaaatggaaagaagctctt 403
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 4527 tatccagttccaagtacgaatctgcatcatat-caacttccaaaatggaaagaagctctt 4469
Query: 404 ggtgaatttgttattagtacgcttaatttggatatggataaagttagagccggtccaatt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4468 ggtgaatttgttattagtacgcttaatttggatatggataaagttagagccggtccaatt 4409
Query: 464 gctggttcatactattactcgatctgtaaagaacaaggtcttcaatatgaggatgaacca 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4408 gctggttcatactattactcgatctgtaaagaacaaggtcttcaatatgaggatgaacca 4349
Query: 524 ctttctaagacagccaagttcttttacgaagatttgaagttgccaaagacattctccnca 583
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 4348 ctttctaagacagccaagttcttttacgaggatttgaagttgccaaagacattctcccaa 4289
Query: 584 tggtaccaaattactatcctacatgaatggatgttattcgtgagaatgagagctatgccg 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4288 tggtaccaaattactatcctacatgaatggatgttattcgtgagaatgagagctatgccg 4229
Query: 644 ttc-aatacggcaagaa-tatcagcagaaagtgggtgatagaacatttgccgatatcgaa 701
||| ||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 4228 ttcaaatacggcaagaattatcagcagaagttggtggatagaacatttgccgatatcgaa 4169
Query: 702 aagagattgtatgacgaaatgaacgtacattccggtagaaatacagatcaatatct-aaa 760
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 4168 aagagattgtatgacgaaatgaacgtacattccggtagaataacagatcaatatctaaaa 4109
Query: 761 gatttcatttctcaacttcgcggggctggaattgcttacgatggagggtttctttctcc- 819
||||||| ||||||||||||||| |||| | ||||||||||| || |||||| ||||||
Sbjct: 4108 gatttcaattctcaacttcgcggtgctgtatttgcttacgat-gaaggtttc-ttctccg 4051
Query: 820 gagattgccggtcttgcgtcaactatcttggagaaaatttgttcggtgg 868
|||| ||||| |||||||||| ||||| ||||| |||||||||||||||
Sbjct: 4050 gaga-tgccgctcttgcgtcagctatc-tggag-aaatttgttcggtgg 4005
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6608
Number of Sequences: 1807
Number of extensions: 6608
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)