BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZB08FM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig729 773 0.0
>3x_Contig729
Length = 2040
Score = 773 bits (390), Expect = 0.0
Identities = 459/474 (96%), Gaps = 6/474 (1%)
Strand = Plus / Plus
Query: 370 acacaccatagtggtacctcaagcagataggttcaaagaacctaaattccaaagaggtct 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acacaccatagtggtacctcaagcagataggttcaaagaacctaaattccaaagaggtct 60
Query: 430 acgtgcaccaacgatatcgacatcattgatggttactgtcttagactgtatatgcattga 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgtgcaccaacgatatcgacatcattgatggttactgtcttagactgtatatgcattga 120
Query: 490 aataagcaaagcatggtttggcaacgatccggtgaaacgtgaaatatttttcaatgagag 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aataagcaaagcatggtttggcaacgatccggtgaaacgtgaaatatttttcaatgagag 180
Query: 550 acacccaggcggaggtataggtaaaatcacttcttctacaaatctgacgcaattggtacg 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 acacccaggcggaggtataggtaaaatcacttcttctacaaatctgacgcaattggtacg 240
Query: 610 ggcaccaaccgattatcaaacaccacagtatcactcttacatggttaagaggaacgagac 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggcaccaaccgattatcaaacaccacagtatcactcttacatggttaagaggaacgagac 300
Query: 670 gttaacagagactcaggtttctttcgctcctaatacctttcgattacatacatttctcgc 729
||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 301 gttaacagagactca-gtttctttcgctcctaataactttcgattacatacaattctcgc 359
Query: 730 ctaaatacgtcatggtccaaacgtgtcctcttacgtgaggaaacccaagcgcgcagtcca 789
||||| |||||| ||||| ||||||| ||||||||||||| ||| |||||||||||||||
Sbjct: 360 ctaaaaacgtcagggtcccaacgtgt-ctcttacgtgagg-aacacaagcgcgcagtcca 417
Query: 790 cttcagaaactgttcctgaattggtttcccaagttatttgtaaatagaaactac 843
| |||| ||||||||||||| ||||||| | || ||||||||||||||||||||
Sbjct: 418 c-tcaggaactgttcctgaa-tggtttcgc-aggtatttgtaaatagaaactac 468
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5769
Number of Sequences: 1807
Number of extensions: 5769
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)