BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZB08RM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1509 1407 0.0
>3x_Contig1509
Length = 8584
Score = 1407 bits (710), Expect = 0.0
Identities = 787/805 (97%), Gaps = 6/805 (0%)
Strand = Plus / Plus
Query: 43 ctttgttgacctctttggaaggtaagaccatccaagaattggttgctgaaggtcaaacca 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6739 ctttgttgacctctttggaaggtaagaccatccaagaattggttgctgaaggtcaaacca 6798
Query: 103 agttggcttctgtcccagctggtggtgcctctggtgctgctgctgcttctggtgctgctg 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6799 agttggcttctgtcccagctggtggtgcctctggtgctgctgctgcttctggtgctgctg 6858
Query: 163 gcgcttctgctgaagaagaaaaggaagaagaaaaggaagaagaaaaggaagaatctgtcg 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 6859 gcgcttctgctgaagaagaaaaggaagaagaaaaggaagaagaaaaggaagaatctgacg 6918
Query: 223 atgacatgggtttcggtctattcgattaaaaaatcaaagctactcgttaactaaaccttc 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6919 atgacatgggtttcggtctattcgattaaaaaatcaaagctactcgttaactaaaccttc 6978
Query: 283 ttttatgtcattcccagtcgaaaattttcgatgcagatatttgtattctaacagttgtga 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6979 ttttatgtcattcccagtcgaaaattttcgatgcagatatttgtattctaacagttgtga 7038
Query: 343 agtgaaccgcattttaaagcttattcactcttccctttggagattgtcactaagttcaat 402
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 7039 agtgaaccgcattttaaagcttattcactcttcc-tttggagattgtcactaagttcaat 7097
Query: 403 aattatgtgtaatcatcgtttaatatgtagaaataaaatatctatacttcactttttttt 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7098 aattatgtgtaatcatcgtttaatatgtagaaataaaatatctatacttcactttttttt 7157
Query: 463 caagctcgctgtttgtcttcattcgatattatctttgatgtgcaatatcgatttcaatga 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7158 caagctcgctgtttgtcttcattcgatattatctttgatgtgcaatatcgatttcaatga 7217
Query: 523 actagagtcgattagctgtaagagtttggatcgcttttcttctgttaaatcaggccaagt 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7218 actagagtcgattagctgtaagagtttggatcgcttttcttctgttaaatcaggccaagt 7277
Query: 583 tttcaaaattaattcgagattttgagccagttctttccattccatttggatctcatctcg 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7278 tttcaaaattaattcgagattttgagccagttctttccattccatttggatctcatctcg 7337
Query: 643 ccattgtctcagtttcacaacggattacatggaattgatatcctggntattaacatcagt 702
|||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 7338 ccattgtctcagttccacaacggataacatggaattgatatcctggtaattaacatcagt 7397
Query: 703 atttgttgcacttcgtataagctcaatggctctgcattttttcgattaatcctgtccttt 762
|||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||
Sbjct: 7398 atttgttgcacttcgtataagctcaatggctctgca-tttttcgattagtcttgtcctta 7456
Query: 763 aagagtcattccttatgtaggagaccttgatccatttcattttcctttatcgataagtct 822
|||||||| | |||||||||||||| ||||||||||||||||| | ||||||||||||||
Sbjct: 7457 aagagtca-tacttatgtaggagactttgatccatttcatttt-cattatcgataagtct 7514
Query: 823 gaaatctaggtaaggttgcctagat 847
| ||||||||| |||||| ||||||
Sbjct: 7515 g-aatctaggt-aggttggctagat 7537
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9783
Number of Sequences: 1807
Number of extensions: 9783
Number of successful extensions: 262
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)