BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZB09FM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1543 432 e-121
3x_Contig1655 349 6e-96
>3x_Contig1543
Length = 9648
Score = 432 bits (218), Expect = e-121
Identities = 269/284 (94%), Gaps = 2/284 (0%)
Strand = Plus / Minus
Query: 330 tggttctaaagtatcagattctatatcaatttcgatagcagaatcctggctaatagcatt 389
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 9613 tggttctaaagtatcagatgctatatcaatgtcgatagcagaatcctggctaatagcatt 9554
Query: 390 gacagtagtagccttgtcaactttcccagtgttctgaaagaatgagagaatgccccgtct 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9553 gacagtagtagccttgtcaactttcccagtgttctgaaagaatgagagaatgccccgtct 9494
Query: 450 cttctggttcgatactgatggtttcatttcactcatggttgggctaccgacgtattgcaa 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9493 cttctggttcgatactgatggtttcatttcactcatggttgggctaccgacgtattgcaa 9434
Query: 510 agatgaccagattatcaaaggtttttgtgttcagcagcttattgccaagcttctattgag 569
||||||| |||||||||||||| | |||||||||||||||| ||||| ||| ||||||||
Sbjct: 9433 agatgacaagattatcaaaggtatatgtgttcagcagctta-tgccaggctcctattgag 9375
Query: 570 nncgtttgtagagccctagcgtcttg-cattgaatggggatctg 612
|||||||||||| ||||||||| |||||||||| ||||||
Sbjct: 9374 gcggtttgtagagcctcagcgtcttgtcattgaatggtgatctg 9331
>3x_Contig1655
Length = 16228
Score = 349 bits (176), Expect = 6e-96
Identities = 179/180 (99%)
Strand = Plus / Minus
Query: 87 cttcctttcacgttccaatctttcttcttctttccttttcgacttatcttgcttctcttt 146
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 193 cttcctttcacgttccaatctttcttcttctttccttttcgacttagcttgcttctcttt 134
Query: 147 ttgtctcctaagttctcgctctgctttcttgtttgccatcgtggatgcagagtcattgtc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ttgtctcctaagttctcgctctgctttcttgtttgccatcgtggatgcagagtcattgtc 74
Query: 207 ttctgcaccgcctgtcttctctgtttcttgttgactatctgctgcatctaatgtagcagt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 ttctgcaccgcctgtcttctctgtttcttgttgactatctgctgcatctaatgtagcagt 14
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9441
Number of Sequences: 1807
Number of extensions: 9441
Number of successful extensions: 86
Number of sequences better than 1.0e-20: 2
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)