BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZB09RM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1257 1287 0.0
>3x_Contig1257
Length = 4889
Score = 1287 bits (649), Expect = 0.0
Identities = 754/779 (96%), Gaps = 9/779 (1%)
Strand = Plus / Plus
Query: 54 gtgatgatagtcatattgagtcatcagagccatctataccagttcgcaaagtggcaatca 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23 gtgatgatagtcatattgagtcatcagagccatctataccagttcgcaaagtggcaatca 82
Query: 114 ctgcgccttcaccacgcatcatgtcgccaagaaacagtgttgcggattctgatccatccc 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 ctgcgccttcaccacgcatcatgtcgccaagaaacagtgttgcggattctgatccatccc 142
Query: 174 aaactaataccggtaataacgaccatattcattccaataataatattcccaatcaaaaca 233
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 143 aaactaataccggtaataacgaccatattcattccaataataataaccacaatcaaaaca 202
Query: 234 atagtactgatccttacggaatttctttcgaacaaaatgaagcgccaggtcttcccgcgc 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 atagtactgatccttacggaatttctttcgaacaaaatgaagcgccaggtcttcccgcgc 262
Query: 294 taaaagctctctcatctttgtcgaagtataagcaaggaactcagttggccacattggtcg 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 taaaagctctctcatctttgtcgaagtataagcaaggaactcagttggccacattggtcg 322
Query: 354 ccgtttcagtgcnctagaacaactgaagaaattctcttcgttcctcaacttttggcacgt 413
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ccgtttcagtgc-ctagaacaactgaagaaattctcttcgttcctcaacttttggcacgt 381
Query: 414 atcggtcaaattcatggttttacttcaaaacaatgcatatataccgcatccgtcctagca 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 atcggtcaaattcatggttttacttcaaaacaatgcatatataccgcatccgtcctagca 441
Query: 474 tccttaaaagaaaacaacatctcttcaattccaccagagttagaagtgttgaaaaatcat 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tccttaaaagaaaacaacatctcttcaattccaccagagttagaagtgttgaaaaatcat 501
Query: 534 aacctatgggaaattgacgatgtcttgcatttctggaagaacgtgttcaagttggatttt 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aacctatgggaaattgacgatgtcttgcatttctggaagaacgtgttcaagttggatttt 561
Query: 594 atgacacatactgccgtggaccattcctctactcatttaaa-tttgcccgagtcgaagaa 652
||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 562 atgacacatactgccgtggaccattcctctactcatttaaattttgccgaagtcgaagaa 621
Query: 653 ttgatgncactc-tttttcatgactggtacgagctaatncccttgttcgat-aaaatgaa 710
|||||| |||| ||||||| ||||||||||||||||| || ||||||||| ||||||||
Sbjct: 622 ttgatgcaactcttttttcaggactggtacgagctaattcctttgttcgataaaaatgaa 681
Query: 711 ttc-actcatactatgaaaagttc-agctgaacgtaactgacccccattntctttgtcag 768
||| |||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||
Sbjct: 682 ttcaactcatactatgaaaagttcaagctgaacgtaactgaccccaatt-tctttgtcag 740
Query: 769 -aaagatgacactggttttcaacaacgnnactanatctatttcctataaaatctnctcc 826
|||||||||||| |||||||||||| |||| |||||||||||||||||||| ||||
Sbjct: 741 aaaagatgacact-gttttcaacaaccgcactagatctatttcctataaaatcttctcc 798
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6082
Number of Sequences: 1807
Number of extensions: 6082
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)