BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZB10FM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1688 1029 0.0
>3x_Contig1688
Length = 18058
Score = 1029 bits (519), Expect = 0.0
Identities = 628/658 (95%), Gaps = 5/658 (0%)
Strand = Plus / Plus
Query: 87 gagctaatagtgaggaacccaagaattgagttagtctttcaaggctggcagttggaattt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4128 gagctaatagtgaggaacccaagaattgagttagtctttcaaggctggcagttggaattt 4187
Query: 147 cattttcattgttttccagatatgtaatcaaattcggcaatgttctgttcagcattggca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4188 cattttcattgttttccagatatgtaatcaaattcggcaatgttctgttcagcattggca 4247
Query: 207 atgataactttttcgaataaagaataaatgatgataaaggatcaaatgcttttgatactg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4248 atgataactttttcgaataaagaataaatgatgataaaggatcaaatgcttttgatactg 4307
Query: 267 aatgtacttgtagtgcgaactcaaaacctatttctatcatttcggaaatagggatgcttc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4308 aatgtacttgtagtgcgaactcaaaacctatttctatcatttcggaaatagggatgcttc 4367
Query: 327 ctgcttcaggctttgcatggtgacttaaaaattcatcctgatgtgaagtctgctgagtat 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4368 ctgcttcaggctttgcatggtgacttaaaaattcatcctgatgtgaagtctgctgagtat 4427
Query: 387 gttctgcaagcctctgcataaaggttgataaaactttctctgttggtaaaatatccataa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4428 gttctgcaagcctctgcataaaggttgataaaactttctctgttggtaaaatatccataa 4487
Query: 447 tgatgtgtcgaagtaaagaatctttgagtgaaatcatgcctttcattaccggagaaatct 506
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 4488 tgatgtgtcgaagtaaagaatctttgagtgaaatcatgccttccattaccgagaaaatct 4547
Query: 507 gagcgttctgaccaaaatcgataacccaggatgattaaagggaatatctcttttaatctt 566
|||||||||||||||||||||||||| ||||||| |||| ||||||||||||| ||||||
Sbjct: 4548 gagcgttctgaccaaaatcgataaccgaggatga-taaaaggaatatctctttaaatctt 4606
Query: 567 gacaagtagtcggtgtaatttctttggcc-acgagacttttgatggtac-gaacacctgn 624
||||||||||||||||| ||||||||||| |||||||||| |||||||| || ||||||
Sbjct: 4607 gacaagtagtcggtgtagtttctttggccaacgagactttcgatggtacggagcacctgg 4666
Query: 625 attggcctatcaatgaaagtaactgaaa-tgccctttcattaattaaatc-aaaagtttg 682
|||| |||||||||||||||| |||||| ||| ||||||| ||||||||| |||||||||
Sbjct: 4667 attgccctatcaatgaaagtagctgaaattgcactttcatcaattaaatcaaaaagtttg 4726
Query: 683 tacttaaacctcacacgtttgggttttttcaaaaaaacaggaccaaacttttgctttc 740
||| | ||||||||||||| || || || | ||||||||| |||||||||||||||
Sbjct: 4727 tacatgaacctcacacgttcggcttcttcgcagaaaacaggagcaaacttttgctttc 4784
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7731
Number of Sequences: 1807
Number of extensions: 7731
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)