BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC42ZB10RM1.SCF screened BAC_end
         (929 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig637                                                         1035   0.0  

>3x_Contig637 
          Length = 2206

 Score = 1035 bits (522), Expect = 0.0
 Identities = 525/526 (99%)
 Strand = Plus / Minus

                                                                       
Query: 55  cttcaacaaatccattttcccattctggaaagctcgtcgactgaattctcccggcatcgc 114
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 cttcaacaaatccattttcccattctggaaagctcgtcgactgaattctcccggcatcgc 481

                                                                       
Query: 115 catacgaatatctctttcagagtcccgcaaaccctggattgagtttaacgctgcctttat 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 catacgaatatctctttcagagtcccgcaaaccctggattgagtttaacgctgcctttat 421

                                                                       
Query: 175 aatagctttccccccatgtagatgcaattccactaaatcttcacctgtaaaggtccgtgg 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 aatagctttccccccatgtagatgcaattccactaaatcttcacctgtaaaggtccgtgg 361

                                                                       
Query: 235 ttgtgggaagtacaagactaacgcttcatctatcagagttgatgccttgggatcatataa 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ttgtgggaagtacaagactaacgcttcatctatcagagttgatgccttgggatcatataa 301

                                                                       
Query: 295 tgaccgaatcatcggtttcctctgccgtagcggtttttttggcgacaatttttttaagat 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tgaccgaatcatcggtttcctctgccgtagcggtttttttggcgacaatttttttaagat 241

                                                                       
Query: 355 atactttgaatgtgtacccgatatcctaattatagctattgcagagtgctgatttgatgg 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 atactttgaatgtgtacccgatatcctaattatagctattgcagagtgctgatttgatgg 181

                                                                       
Query: 415 cgttgataatgcatacactgtaggatggaaaaatgtcgctggaacactataaaaccgtcg 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 cgttgataatgcatacactgtaggatggaaaaatgtcgctggaacactataaaaccgtcg 121

                                                                       
Query: 475 caacattgggctgaacatcactttttgcgaaaaattgaaccaaatgagagtgggatcctt 534
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 120 caacattgggctgaacatcactttttgcgaaaaattgaacctaatgagagtgggatcctt 61

                                                         
Query: 535 gtagactaccattacgattccaactgcaatttatggtagtttagaa 580
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60  gtagactaccattacgattccaactgcaatttatggtagtttagaa 15


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6865
Number of Sequences: 1807
Number of extensions: 6865
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)