BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZB11FM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig900 1427 0.0
>3x_Contig900
Length = 3046
Score = 1427 bits (720), Expect = 0.0
Identities = 754/764 (98%), Gaps = 1/764 (0%)
Strand = Plus / Plus
Query: 90 ttgtgagatgcttcgtgtcagtacgctgttcggaaaccagtatataagaaggttttccaa 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1387 ttgtgagatgcttcgtgtcagtacgctgttcggaaaccagtatataagaaggttttccaa 1446
Query: 150 tgggtcgatacatttagcgaagaacccgtggctcaagaggcgatctttggagcagctttc 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1447 tgggtcgatacatttagcgaagaacccgtggctcaagaggcgatctttggagcagctttc 1506
Query: 210 gaaatcattaccatctgtgccgacgcctgttttggaagtagtgcacaaatgcagtgatga 269
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1507 gaaatcattaccagctgtgccgacgcctgttttggaagtagtgcacaaatgcagtgatga 1566
Query: 270 tgtacctttggatgaagaacaaaggttaacgataaaagactacttaacacacgaggaaac 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1567 tgtacctttggatgaagaacaaaggttaacgataaaagactacttaacacacgaggaaac 1626
Query: 330 agaaatacccactgttgacaggtccatcttgttgaaatatttgtatggtaagaaagagta 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1627 agaaatacccactgttgacaggtccatcttgttgaaatatttgtatggtaagaaagagta 1686
Query: 390 cgatatggtagaaaccatggccaagttacatttatttgataaagacggatactttctgga 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1687 cgatatggtagaaaccatggccaagttacatttatttgataaagacggatactttctgga 1746
Query: 450 aacatctactgtgaacaacgttcaagtttatttcgaagttctaatccagacaaagcaact 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1747 aacatctactgtgaacaacgttcaagtttatttcgaagttctaatccagacaaagcaact 1806
Query: 510 tgacaagttaacggaagaagctgttaagtacatatcacagttttctattaataagcaggg 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1807 tgacaagttaacggaagaagctgttaagtacatatcacagttttctattaataagcaggg 1866
Query: 570 aacatctgtgtacatggtaaattatttgttcgttaaattgtatcaaaatttctcgcctca 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1867 aacatctgtgtacatggtaaattatttgttcgttaaattgtatcaaaatttctcgcctca 1926
Query: 630 agatgccctatacatctggaccaaacttgtcagtgtttactacggacattgtgaattgac 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1927 agatgccctatacatctggaccaaacttgtcagtgtttactacggacattgtgaattgac 1986
Query: 690 tagtatggatatatatgggccgatactaaatcatttgtactatttctttaa-gccagcat 748
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1987 tagtatggatatatatgggccgatactaaatcatttgtactatttctttaaggccagcaa 2046
Query: 749 aggatcgcatcaatgtgtcctgccgttgtttaaacgtatgcaaaatgatgatggcttaat 808
|| ||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||
Sbjct: 2047 agaatcgcatcaatgtgtcctgccgttgttaaaacgtatgcaaaatgaggatggcataat 2106
Query: 809 gcccgctttacatttaccatcgacattggtaacttttttttctt 852
|||||||| ||||||| ||||||||||| |||||||||||||||
Sbjct: 2107 gcccgcttcacatttagcatcgacattgataacttttttttctt 2150
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7090
Number of Sequences: 1807
Number of extensions: 7090
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)