BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZB11RM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig744 622 e-178
3x_Contig803 357 3e-98
>3x_Contig744
Length = 2812
Score = 622 bits (314), Expect = e-178
Identities = 337/342 (98%), Gaps = 2/342 (0%)
Strand = Plus / Plus
Query: 43 gcttcttcaaaacgatagggaatcatagacgtacgtggaaaaatgctctaaatttgccaa 102
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2471 gcttcttcaaaacgatagggaatcaaagacgtacgtggaaaaatgctctaaatttgccaa 2530
Query: 103 atattacatggaatctgtgaaatttagatatgaggatctcgaaaaggaatgtatatttga 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2531 atattacatggaatctgtgaaatttagatatgaggatctcgaaaaggaatgtatatttga 2590
Query: 163 tcctaatgtgtttaatataaatgaaccaagtcctttgcaaaagtttaaagatgcatataa 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 2591 tcctaatgtgtttaatataaatgaaccaagtcctttgcaaaagtttaaagatgcagagaa 2650
Query: 223 caaggagaagataatttcagatccagaatctcctgctttttgtgtcgagaacgaccatga 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2651 caaggagaagataatttcagatccagaatctcctgctttttgtgtcgagaacgaccatga 2710
Query: 283 aagttccaaggttcagctacggagaaaagtagggttt-gttgcacaagatggccacgaaa 341
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2711 aagttccaaggttcagctacggagaaaagtagggtttggttgcacaagatggccacgaaa 2770
Query: 342 tacagctattcgatagtaatcttccacca-tgcacaacagaa 382
||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2771 tacagctattcgatagtaatcttccaccattgcacaacagaa 2812
>3x_Contig803
Length = 2286
Score = 357 bits (180), Expect = 3e-98
Identities = 241/256 (94%), Gaps = 4/256 (1%)
Strand = Plus / Plus
Query: 681 atcacttaagatatatggtgaaaagattagaaaagcagcgcctcatcgactcaactgcac 740
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atcacttaagaaatatggtgaaaagattagaaaagcagcgcctcatcgactcaactgcac 60
Query: 741 atgagagtaaacagggaagaatttt-ccaagttgaccactatacatgttcagaagttgaa 799
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 61 atgagagtaaaca-ggaagaattttcccaagttgaccactatacatgttcagaagttgaa 119
Query: 800 tgatctttgacgtactttacaggaggtagaagttcagtattctagacataaggcgcacaa 859
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 120 tgatcttgaacgtactttacaggaggtagaagttcagtattctagacaaaaggcgcacaa 179
Query: 860 tatttcatcattaggaacttgggattaccgcaatggaaagcatgacccggggttttaaat 919
|| |||||||||| ||||||| || ||||||||||||| |||||| |||| |||||||||
Sbjct: 180 taattcatcatta-gaacttgtgaataccgcaatggaaggcatga-ccggtgttttaaat 237
Query: 920 cttgttttcagtcaag 935
|| ||||||||||||
Sbjct: 238 ctgtttttcagtcaag 253
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6677
Number of Sequences: 1807
Number of extensions: 6677
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 2
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)