BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZB12FM1.SCF screened BAC_end
(895 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1663 1136 0.0
3x_Contig1557 155 2e-37
3x_Contig1518 153 7e-37
3x_Contig1428 151 3e-36
3x_Contig1446 149 1e-35
3x_Contig1374 149 1e-35
3x_Contig1521 145 2e-34
3x_Contig1741 113 6e-25
3x_Contig1272 111 2e-24
>3x_Contig1663
Length = 13533
Score = 1136 bits (573), Expect = 0.0
Identities = 668/689 (96%), Gaps = 8/689 (1%)
Strand = Plus / Plus
Query: 87 tattttttacttgacattgcatattcagtattcaaagttcacgttctgttgtaactttta 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tattttttacttgacattgcatattcagtattcaaagttcacgttctgttgtaactttta 632
Query: 147 aaaagtcgccatgacaaaaaaacccacgcactttccatacacagacttttgataaacatt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 aaaagtcgccatgacaaaaaaacccacgcactttccatacacagacttttgataaacatt 692
Query: 207 tcataagtctttttatggagaataaaaggagtaattgctaaacagttgaatcatgtgctc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 tcataagtctttttatggagaataaaaggagtaattgctaaacagttgaatcatgtgctc 752
Query: 267 cacatagaattcaatccaaaccgatgatacagttcagtattacattagtatgaccatgtc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 cacatagaattcaatccaaaccgatgatacagttcagtattacattagtatgaccatgtc 812
Query: 327 acgggaacataaagtttgaaaaaacaactttttcatcaatatcatccgatatagtgtaac 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 acgggaacataaagtttgaaaaaacaactttttcatcaatatcatccgatatagtgtaac 872
Query: 387 ggctatcacatcacgctttcaccgtggagaccggggttcgactccccgtatcggagtatt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 ggctatcacatcacgctttcaccgtggagaccggggttcgactccccgtatcggagtatt 932
Query: 447 attttttgtattttcttattacccagtgggaagttaatgttcgactgtgaatat-attgc 505
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 933 attttttgtattttcttattacccagtggaaagttaatgttcgactgtgaatataattgc 992
Query: 506 aattcgacatcaacgtcgaaaatgcatacattcttttga-taatacttacggaagctaaa 564
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 993 aattcgacatcaacgtcgaaaatgcatacattcttttgattaatacttacggaagctaaa 1052
Query: 565 tacagattggaatattttttagctcttaaataccaaaatta-cacttcttatgtcttcga 623
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1053 tacagattggaatattttttagctcttaaataccaaaattaccacttcttatgtcttcgt 1112
Query: 624 ataacttcttcctattccgttgtttatccatattggcactatgttagctattttgtcacc 683
||||||||||||||||| |||||||||||||||| ||||||| ||||| |||||||||
Sbjct: 1113 ataacttcttcctattcgtttgtttatccatattgccactatg-tagcttatttgtcacc 1171
Query: 684 ggtccttgagttttaaatcct-gctgggg-gggactggggactgttgct-tttgt-ccta 739
|||||||||| | |||||||| ||||||| || ||||||||||| |||| |||| ||||
Sbjct: 1172 ggtccttgaggtataaatcctggctggggtggaactggggactgatgctgattgtaccta 1231
Query: 740 ccgccgttgacagggggacaaaattgttg 768
||||||||||||||||||| |||||||||
Sbjct: 1232 ccgccgttgacagggggacgaaattgttg 1260
>3x_Contig1557
Length = 10562
Score = 155 bits (78), Expect = 2e-37
Identities = 81/82 (98%)
Strand = Plus / Plus
Query: 370 atccgatatagtgtaacggctatcacatcacgctttcaccgtggagaccggggttcgact 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2541 atccgatatagtgtaacggctatcacatcacgctttcaccgtggagaccggggttcgact 2600
Query: 430 ccccgtatcggagtattatttt 451
||||||||||||||||| ||||
Sbjct: 2601 ccccgtatcggagtattttttt 2622
>3x_Contig1518
Length = 11021
Score = 153 bits (77), Expect = 7e-37
Identities = 77/77 (100%)
Strand = Plus / Minus
Query: 370 atccgatatagtgtaacggctatcacatcacgctttcaccgtggagaccggggttcgact 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5818 atccgatatagtgtaacggctatcacatcacgctttcaccgtggagaccggggttcgact 5759
Query: 430 ccccgtatcggagtatt 446
|||||||||||||||||
Sbjct: 5758 ccccgtatcggagtatt 5742
>3x_Contig1428
Length = 9146
Score = 151 bits (76), Expect = 3e-36
Identities = 76/76 (100%)
Strand = Plus / Minus
Query: 370 atccgatatagtgtaacggctatcacatcacgctttcaccgtggagaccggggttcgact 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6455 atccgatatagtgtaacggctatcacatcacgctttcaccgtggagaccggggttcgact 6396
Query: 430 ccccgtatcggagtat 445
||||||||||||||||
Sbjct: 6395 ccccgtatcggagtat 6380
>3x_Contig1446
Length = 10598
Score = 149 bits (75), Expect = 1e-35
Identities = 81/83 (97%)
Strand = Plus / Minus
Query: 370 atccgatatagtgtaacggctatcacatcacgctttcaccgtggagaccggggttcgact 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3305 atccgatatagtgtaacggctatcacatcacgctttcaccgtggagaccggggttcgact 3246
Query: 430 ccccgtatcggagtattattttt 452
|||||||||||||| || |||||
Sbjct: 3245 ccccgtatcggagtgtttttttt 3223
>3x_Contig1374
Length = 8985
Score = 149 bits (75), Expect = 1e-35
Identities = 81/83 (97%)
Strand = Plus / Minus
Query: 370 atccgatatagtgtaacggctatcacatcacgctttcaccgtggagaccggggttcgact 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8891 atccgatatagtgtaacggctatcacatcacgctttcaccgtggagaccggggttcgact 8832
Query: 430 ccccgtatcggagtattattttt 452
|||||||||||||| || |||||
Sbjct: 8831 ccccgtatcggagttttcttttt 8809
>3x_Contig1521
Length = 8057
Score = 145 bits (73), Expect = 2e-34
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 371 tccgatatagtgtaacggctatcacatcacgctttcaccgtggagaccggggttcgactc 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4296 tccgatatagtgtaacggctatcacatcacgctttcaccgtggagaccggggttcgactc 4237
Query: 431 cccgtatcggagt 443
|||||||||||||
Sbjct: 4236 cccgtatcggagt 4224
>3x_Contig1741
Length = 21706
Score = 113 bits (57), Expect = 6e-25
Identities = 69/73 (94%)
Strand = Plus / Minus
Query: 370 atccgatatagtgtaacggctatcacatcacgctttcaccgtggagaccggggttcgact 429
||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||
Sbjct: 9345 atccgatatagtgtaacggctatcacaccacgctctcaccgtggagacccgggttcgact 9286
Query: 430 ccccgtatcggag 442
||| |||||||||
Sbjct: 9285 cccggtatcggag 9273
>3x_Contig1272
Length = 8315
Score = 111 bits (56), Expect = 2e-24
Identities = 68/72 (94%)
Strand = Plus / Minus
Query: 371 tccgatatagtgtaacggctatcacatcacgctttcaccgtggagaccggggttcgactc 430
|||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||
Sbjct: 5215 tccgatatagtgtaacggctatcacaccacgctctcaccgtggagacccgggttcgactc 5156
Query: 431 cccgtatcggag 442
|| |||||||||
Sbjct: 5155 ccggtatcggag 5144
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5991
Number of Sequences: 1807
Number of extensions: 5991
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 9
length of query: 895
length of database: 10,358,551
effective HSP length: 16
effective length of query: 879
effective length of database: 10,329,639
effective search space: 9079752681
effective search space used: 9079752681
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)