BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZB12RM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig560 1485 0.0
>3x_Contig560
Length = 2642
Score = 1485 bits (749), Expect = 0.0
Identities = 822/839 (97%), Gaps = 6/839 (0%)
Strand = Plus / Minus
Query: 47 ttaagtagattcgaaatcaaaa-tattaccactgttgtataagcccatgataatatcacg 105
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 2209 ttaagtagattcgaaatcaaaaatattaccactgttgtataagcccatgataatatcacg 2150
Query: 106 atattaaggtacttccttgatccaaatagcctctctaacgatctaaactgataccaaatc 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2149 atattaaggtacttccttgatccaaatagcctctctaacgatctaaactgataccaaatc 2090
Query: 166 aaggtcattatggcaacatcgctttcatttaaactccctaactgaaacgtaaaatacctc 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2089 aaggtcattatggcaacatcgctttcatttaaactccctaactgaaacgtaaaatacctc 2030
Query: 226 caatattgtccatattcaacgataaatgggtcatattgtaaaaggaacagatacttcata 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2029 caatattgtccatattcaacgataaatgggtcatattgtaaaaggaacagatacttcata 1970
Query: 286 ttgaataatgatgctgttagggcaacccctacacaacaaatcatcagtatctttgttatt 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1969 ttgaataatgatgctgttagggcaacccctacacaacaaatcatcagtatctttgttatt 1910
Query: 346 gggaattgaaccaatccagttggtatttccacacctacactatttgttgacggcattttg 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1909 gggaattgaaccaatccagttggtatttccacacctacactatttgttgacggcattttg 1850
Query: 406 gttaaaatttctagcagcgttctgccaagtgatctttccctcgaaatgtattgttcgaga 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1849 gttaaaatttctagcagcgttctgccaagtgatctttccctcgaaatgtattgttcgaga 1790
Query: 466 attagttcggggagactattgtttcattcgataccagaatatctgcgcttcaagctcgtc 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1789 attagttcggggagactattgtttcattcgataccagaatatctgcgcttcaagctcgtc 1730
Query: 526 tctattctttacctgtaagattataattatttaaagtaaaaagtttaagtctttcatttt 585
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1729 tctattctttacctgtaagattataattatttaaggtaaaaagtttaagtctttcatttt 1670
Query: 586 gatattgaaatattacgattgaacagtgaaactatatgcattcatatcaagaagaatacc 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1669 gatattgaaatattacgattgaacagtgaaactatatgcattcatatcaagaagaatacc 1610
Query: 646 tagataccattacgagcatatagggaatgcaattgccataaacttcaagtacgctagaga 705
|||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 1609 tagataccattacgagcaaatagggaaggcaattgccataaacttcaggtacgctagaga 1550
Query: 706 aataagtcgtgtgagtactttgcctgctatcctttctg-acagttcgatgatagaaacng 764
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
Sbjct: 1549 aataagtcgtgtgagtactttgcctgctatcc-ttctgaacagttcgatgatagaaacgg 1491
Query: 765 agtctattaaccac-tgatatactgcg-taaacggttcatcggtgatttcctcgaccgtt 822
|||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 1490 agtctattaaccacttgata-actgcgttaaacggttcatcggtgatttcctcgaccgtt 1432
Query: 823 ggtgaatcgcaagttcctaacaatattgnctacttactgccacgtatccgagattatca 881
||||| |||||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 1431 ggtgagtcgcaagttcttaacaatattgtctactacttgccacgtatccgagattatca 1373
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6409
Number of Sequences: 1807
Number of extensions: 6409
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)