BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZC01FM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig189 1197 0.0
>3x_Contig189
Length = 1476
Score = 1197 bits (604), Expect = 0.0
Identities = 670/687 (97%), Gaps = 4/687 (0%)
Strand = Plus / Plus
Query: 88 cctggcctatacgaattcatatcgaaagattctctggtaagagtaggtatcaagagtgta 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 cctggcctatacgaattcatatcgaaagattctctggtaagagtaggtatcaagagtgta 752
Query: 148 aaagatccaaaggacgatccaaagatcaattactttgaagaactaaagaagaaacctaca 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 aaagatccaaaggacgatccaaagatcaattactttgaagaactaaagaagaaacctaca 812
Query: 208 aaggaatatattacaaagttgaagtcccagcaaccggaatatagaatgttcagggctcgt 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 aaggaatatattacaaagttgaagtcccagcaaccggaatatagaatgttcagggctcgt 872
Query: 268 tgaaatagatcgatgtgtgtatataaacgactcttttacgtataacttttgtgagagcta 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 tgaaatagatcgatgtgtgtatataaacgactcttttacgtataacttttgtgagagcta 932
Query: 328 atcccactatctgtaaataggctatcaaagattcaagatttaaagtcccaaatgagtaaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 atcccactatctgtaaataggctatcaaagattcaagatttaaagtcccaaatgagtaaa 992
Query: 388 gtttggttgtttgtcaaactacaaaagttaatacttacgtatatttatctatttcacaca 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 993 gtttggttgtttgtcaaactacaaaagttaatacttacgtatatttatctatttcacaca 1052
Query: 448 ttgtccttgcaatgaacccttctaaatggtagattgctttgtttccaaggttgagacggt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1053 ttgtccttgcaatgaacccttctaaatggtagattgctttgtttccaaggttgagacggt 1112
Query: 508 gatcaaaagtgcatgcagtatcgataattgccaacttcaacggatctgactgggcatctg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1113 gatcaaaagtgcatgcagtatcgataattgccaacttcaacggatctgactgggcatctg 1172
Query: 568 aaagcaattgcgtcgttaattcatggactatggttttggcangaatacaatgggctaata 627
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1173 aaagcaattgcgtcgttaattcatggactatggttttggcaggaatacaatgggctaata 1232
Query: 628 gatcataatttatggaacggcattctacaagg-tattaacaggtctttctttttatattt 686
|||||||||| ||||||||||||||||||||| ||||||||| |||||||||| ||||||
Sbjct: 1233 gatcataattcatggaacggcattctacaaggttattaacagttctttcttttaatattt 1292
Query: 687 tctta-ccattttatggatc-cccattgccaattatgtctgttccaaggtgtttggtttc 744
|| || |||||||||||||| || ||||||||| | |||||||| ||||||| | |||||
Sbjct: 1293 tcctagccattttatggatcaccaattgccaatcaggtctgttcaaaggtgtatcgtttc 1352
Query: 745 ttaaatgccatt-attttgtattgagg 770
|||||||| ||| |||||||| |||||
Sbjct: 1353 ttaaatgcaattcattttgtagtgagg 1379
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,692
Number of Sequences: 1807
Number of extensions: 12692
Number of successful extensions: 121
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)