BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC42ZC01RM1.SCF screened BAC_end
         (919 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1442                                                        1540   0.0  

>3x_Contig1442 
          Length = 8270

 Score = 1540 bits (777), Expect = 0.0
 Identities = 826/837 (98%), Gaps = 4/837 (0%)
 Strand = Plus / Minus

                                                                        
Query: 44   gcttgtaacaaacgatcgtctccagatcaattgagctataactctttcaccactatgaag 103
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5243 gcttgtaacaaacgatcgtctccagatcaattgagctataactctttcaccactatgaag 5184

                                                                        
Query: 104  aaaaat-acataaaaaaaccgtgaacctgaacaggaactttcaaaagtgcgttcttagtg 162
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5183 aaaaatcacataaaaaaaccgtgaacctgaacaggaactttcaaaagtgcgttcttagtg 5124

                                                                        
Query: 163  aaaagaaaaaaacaccaaatgtatcttcactggctcctgaacaacaccttatatttcaaa 222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5123 aaaagaaaaaaacaccaaatgtatcttcactggctcctgaacaacaccttatatttcaaa 5064

                                                                        
Query: 223  acaataaagtcatctcatgaccatctattcgtaaaccaactgctcttctcttacttttac 282
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5063 acaataaagtcatctcatgaccatctattcgtaaaccaactgctcttctcttacttttac 5004

                                                                        
Query: 283  gtatgttgagcctttccgatttctcaacatcccaacaaattcgcaaaaaccatgcgatgc 342
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5003 gtatgttgagcctttccgatttctcaacatcccaacaaattcgcaaaaaccatgcgatgc 4944

                                                                        
Query: 343  tgaagagggaaatggtgttacccgaccattacgttatcatgagtagacacgtgaccgtaa 402
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4943 tgaagagggaaatggtgttacccgaccattacgttatcatgagtagacacgtgaccgtaa 4884

                                                                        
Query: 403  agatctttaggtgtcctcgctaaggtgatgatcggtatcacctggtgttcggtaccgctc 462
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4883 agatctttaggtgtcctcgctaaggtgatgatcggtatcacctggtgttcggtaccgctc 4824

                                                                        
Query: 463  agtggttgtatttggtgttgggatgatcgtatctccaaagcctgttgtggaaggagtagt 522
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4823 agtggttgtatttggtgttgggatgatcgtatctccaaagcctgttgtggaaggagtagt 4764

                                                                        
Query: 523  tggagggattgttgtagcttctgttgggttttgttgttgcggttgatgatgatggtggtg 582
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4763 tggagggattgttgtagcttctgttgggttttgttgttgcggttgatgatgatggtggtg 4704

                                                                        
Query: 583  atgatgggtattctgatgttctggatccgtgtctgattcagaagcgtctctggtaggcgt 642
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4703 atgatgggtattctgatgttctggatccgtgtctgattcagaagcgtctctggtaggcgt 4644

                                                                        
Query: 643  ttgaactcctgtactatttccagtggtgtttgttgagtttgattcttgacaccagtacct 702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4643 ttgaactcctgtactatttccagtggtgtttgttgagtttgattcttgacaccagtacct 4584

                                                                        
Query: 703  atgaaattcccatgatttcagttggcacagtcttgagcaatatttggtgcgcttacacct 762
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4583 atgaaattcccatgatttcagttggcacagtcttgagcaatatttggtgcgcttacacct 4524

                                                                        
Query: 763  tctacatttgggggaactgtttttgaatgattcttccaattttccacagctgaaattagc 822
            ||||||||| ||||||||| ||||| |||| |||||| |||| |||||||||||||||||
Sbjct: 4523 tctacattt-ggggaactg-ttttggatga-tcttcccatttcccacagctgaaattagc 4467

                                                                     
Query: 823  acactgcctgacttctgtagcctcatgttttcttgacgagtttctcattaccacgga 879
            ||||||||||||| |||||||||||||||| ||  ||||||||||||||||||||||
Sbjct: 4466 acactgcctgactcctgtagcctcatgtttcctgcacgagtttctcattaccacgga 4410


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7397
Number of Sequences: 1807
Number of extensions: 7397
Number of successful extensions: 119
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)