BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZC02FM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1192 1292 0.0
>3x_Contig1192
Length = 5015
Score = 1292 bits (652), Expect = 0.0
Identities = 738/760 (97%), Gaps = 5/760 (0%)
Strand = Plus / Minus
Query: 87 ctctttgaatggcattcgctaaaagagcctgcccagtgcgtatcatacaaccccaaccaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4654 ctctttgaatggcattcgctaaaagagcctgcccagtgcgtatcatacaaccccaaccaa 4595
Query: 147 tatctgaataaaaactgtcaggatcagttaaagcattttctaatgtgttgataggattat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4594 tatctgaataaaaactgtcaggatcagttaaagcattttctaatgtgttgataggattat 4535
Query: 207 ctctaaaaaaaatggtaaaattgataggagatggtccattctcatttctgcggatagggg 266
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4534 ctctaaaaaaaagggtaaaattgataggagatggtccattctcatttctgcggatagggg 4475
Query: 267 taaactgtgtgcggtatgtgaagaacactcgtgaatgtacgtcagacaaaagtccaggat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4474 taaactgtgtgcggtatgtgaagaacactcgtgaatgtacgtcagacaaaagtccaggat 4415
Query: 327 ttaatgagacgatatttatcaggctttccaaggccgagtcatctgtttccacatccgttc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4414 ttaatgagacgatatttatcaggctttccaaggccgagtcatctgtttccacatccgttc 4355
Query: 387 ttgatttattgttaaggggagcgtattctttgcccaatatgaacacggtgccatctcgat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4354 ttgatttattgttaaggggagcgtattctttgcccaatatgaacacggtgccatctcgat 4295
Query: 447 caacatcttccactatacctaaatgttgtgatatccttgacaagaactccatatttgcat 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4294 caacatcttccactatacctaaatgttgtgatatccttgacaagaactccatatttgcat 4235
Query: 507 agggatggctgggtttgaagattgagcgatacgttttcctatactttcatgcactttgta 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4234 agggatggctgggtttgaagattgagcgatacgttttcctatactttcatgcactttgta 4175
Query: 567 ctcacttgctttttacgatgctgatcataatttgcagaaacttatatttctaatattaat 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4174 ctcacttgctttttacgatgctgatcataatttgcagaaacttatatttctaatattaat 4115
Query: 627 gaacaataatctatatgaaaaatgcatttaaaaccatgtagaaaataatactttcataac 686
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 4114 gaacaataatctatatgaaaaatgcatttaaaaccatgtagaaaataatac-ttcataac 4056
Query: 687 aagaacgtaactctaaagtaagccctggtacacccctttgttgcaactgcttagaatttg 746
|||||||||||||||| ||||| ||||||||||||| |||||||| ||||| |||||||
Sbjct: 4055 aagaacgtaactctaaggtaag-cctggtacacccc-ttgttgcagctgctaggaatttg 3998
Query: 747 aagcattaggtcatcgtgattatggcaaagaagcataaacattattattgcccgaagtgg 806
||||| |||||||||||||| |||||||||| |||||||||||| || |||| || ||||
Sbjct: 3997 aagcagtaggtcatcgtgataatggcaaagaggcataaacatta-taatgccagaggtgg 3939
Query: 807 ttgggaggtcaataagcaataaattccagccccatggtga 846
||||| ||||| |||||| |||| | |||| ||||||||
Sbjct: 3938 -tgggaagtcaaaaagcaagaaatccaagccacatggtga 3900
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5808
Number of Sequences: 1807
Number of extensions: 5808
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)