BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZC02RM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig178 1195 0.0
3x_Contig1092 886 0.0
3x_Contig1805 464 e-130
3x_Contig1773 149 1e-35
3x_Contig1213 143 7e-34
3x_Contig1670 133 7e-31
3x_Contig1803 111 3e-24
3x_Contig1701 105 2e-22
3x_Contig1806 103 6e-22
>3x_Contig178
Length = 1315
Score = 1195 bits (603), Expect = 0.0
Identities = 692/715 (96%), Gaps = 5/715 (0%)
Strand = Plus / Minus
Query: 48 taatagcgttatgttagtatctccctgcaagtatgaaatatggtccacaagtccggtgcg 107
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 taatagcgttatgttag-agctccctgcaagtatgaaatatggtccacaagtccggtgcg 798
Query: 108 tactgttaagatctgtatttggcgcagaagcattgtaaattggtggagatatatccatcg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 tactgttaagatctgtatttggcgcagaagcattgtaaattggtggagatatatccatcg 738
Query: 168 actcagggagccaatcatcactcggatgtctgctaccccagctgcggccacatcgtatgg 227
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 737 actcagggagccaatcatcactcggatgtctgctaccccagctgcggccacagcgtatgg 678
Query: 228 catcacctaatgtagtgcttgaatctattggtagcacatactgttcagtgcaaaataatg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 catcacctaatgtagtgcttgaatctattggtagcacatactgttcagtgcaaaataatg 618
Query: 288 ttggtccaccaacttccagtgacattgttgactactttctgtgatttaacacaagttgtt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ttggtccaccaacttccagtgacattgttgactactttctgtgatttaacacaagttgtt 558
Query: 348 ggacagcataatattatgaaggatatatgatcaaattgtaccattatcgagcacttgtga 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ggacagcataatattatgaaggatatatgatcaaattgtaccattatcgagcacttgtga 498
Query: 408 taaataaatacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgttgc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 taaataaatacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgttgc 438
Query: 468 atctattg-aacagagataagcagag-acgtaacgagaaaattaatcttcaatgcgactt 525
|||||||| |||| | ||||||| || || |||| | |||||||||||||||||| ||||
Sbjct: 437 atctattgcaacacacataagcacagcacctaaccacaaaattaatcttcaatgccactt 378
Query: 526 agtcaaaactgtatcagattctgttgttctctggcgttgtaggagcctttctaatgcgcc 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 agtcaaaactgtatcagattctgttgttctctggcgttgtaggagcctttctaatgcgcc 318
Query: 586 agttattgaaccaatg-ctaaatacgaagctgagctgagaggaactaggatcagcatcaa 644
|||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 317 agttattgaaccaatgcctaaatacgcagctgagctgagaggcactaggatcagcatcaa 258
Query: 645 ggctacagcacccagtatttgaacatcagatgtaacaagtatataagtag-aagtttctt 703
|||||||||||||||||||||||||||||||| ||||||||||||| ||| ||| ||| |
Sbjct: 257 ggctacagcacccagtatttgaacatcagatgcaacaagtatataactagcaagcttcat 198
Query: 704 catccaaggagaacaccgtaagtaattttcctaattactcggaagttcgtatact 758
|||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||
Sbjct: 197 catccaaggagaacaccgtaagtaattttcctaactacacggaagttcttatact 143
>3x_Contig1092
Length = 2520
Score = 886 bits (447), Expect = 0.0
Identities = 484/495 (97%), Gaps = 1/495 (0%)
Strand = Plus / Plus
Query: 48 taatagcgttatgttagtatctccctgcaagtatgaaatatggtccacaagtccggtgcg 107
||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 234 taatagcgttatgttag-agctccctgcaagtatgaaatatggtccacaagtctggtgcg 292
Query: 108 tactgttaagatctgtatttggcgcagaagcattgtaaattggtggagatatatccatcg 167
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 293 tactgttaagatctgtatttggtgcagaagcattgtaaattggtggagatatatccatcg 352
Query: 168 actcagggagccaatcatcactcggatgtctgctaccccagctgcggccacatcgtatgg 227
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 353 actcagggagccaatcatcactcggatgtctgctaccccagctgcggccacagcgtatgg 412
Query: 228 catcacctaatgtagtgcttgaatctattggtagcacatactgttcagtgcaaaataatg 287
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 413 catcacctaatgtagtgcttgaatcgattggtagcacatactgttcagtgcaaaataatg 472
Query: 288 ttggtccaccaacttccagtgacattgttgactactttctgtgatttaacacaagttgtt 347
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 473 ttggtccaccaacttctagtgacattgttgactactttctgtgatttaacacaacttgtt 532
Query: 348 ggacagcataatattatgaaggatatatgatcaaattgtaccattatcgagcacttgtga 407
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ggacagcatgatattatgaaggatatatgatcaaattgtaccattatcgagcacttgtga 592
Query: 408 taaataaatacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgttgc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 taaataaatacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgttgc 652
Query: 468 atctattgaacagagataagcagagacgtaacgagaaaattaatcttcaatgcgacttag 527
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 653 atctattgaacagagataagcagaggcgtaacgagaaaattaatcttcaatgggacttag 712
Query: 528 tcaaaactgtatcag 542
|||||||||||||||
Sbjct: 713 tcaaaactgtatcag 727
>3x_Contig1805
Length = 19369
Score = 464 bits (234), Expect = e-130
Identities = 316/338 (93%), Gaps = 4/338 (1%)
Strand = Plus / Minus
Query: 573 tttctaatgcgccagttattgaaccaatgctaaatacgaagctgagctgagaggaactag 632
||||||| ||| || ||| ||||||||||||||||| |||| ||||||||||| ||||||
Sbjct: 16947 tttctaaggcgtcatttagtgaaccaatgctaaataagaagttgagctgagagcaactag 16888
Query: 633 gatcagcatcaaggctacagcacccagtatttgaacatcagatgtaacaagtatataagt 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16887 gatcagcatcaaggctacagcacccagtatttgaacatcagatgtaacaagtatataagt 16828
Query: 693 agaagtttcttcatccaaggagaacaccgtaagtaattttcctaattactcggaagttcg 752
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16827 agaagttccttcatccaaggagaacaccgtaagtaattttcctaattactcggaagttcg 16768
Query: 753 tatactggccacc-atacatatctattaattattatcagctacaagtcaaatgacatcca 811
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16767 tatactggccaccaatacatatctattaattattatcagctacaagtcaaatgacatcca 16708
Query: 812 tttacatgattactaccaaaccctttaagcaaacttccctactaccaaattcgatgttat 871
||||||||| ||||||| |||||| || |||||| ||||||||||||||||||||||||
Sbjct: 16707 tttacatgaatactacc-aaccctctaggcaaac-tccctactaccaaattcgatgtta- 16651
Query: 872 ttccattcaaccagtttgtaacaattataggctttatt 909
||||| || | ||||| |||||||| ||| || |||||
Sbjct: 16650 ttccagtccaacagttagtaacaataataagcattatt 16613
Score = 103 bits (52), Expect = 6e-22
Identities = 83/92 (90%), Gaps = 1/92 (1%)
Strand = Plus / Minus
Query: 547 tgttgttctctggcgttgtaggagcctttctaatgcgccagttattgaaccaatgctaaa 606
|||||||| |||||||||||||||| |||||| |||||||||||||||||||||||| |
Sbjct: 178 tgttgttccctggcgttgtaggagcacttctaaggcgccagttattgaaccaatgctaga 119
Query: 607 tacgaagctg-agctgagaggaactaggatca 637
|| ||| ||| |||||||| ||||||||||||
Sbjct: 118 taagaatctgaagctgagacgaactaggatca 87
>3x_Contig1773
Length = 8694
Score = 149 bits (75), Expect = 1e-35
Identities = 104/111 (93%), Gaps = 2/111 (1%)
Strand = Plus / Plus
Query: 600 tgctaaatacgaagctgagctgagaggaactaggatcagcatcaaggctacagcacccag 659
||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 8525 tgctaaataagaagctgagctgagagcaactaggatcagcatcaaggctacagca-ccat 8583
Query: 660 tatttgaacatcagatgtaacaagtatataagtagaa-gtttcttcatcca 709
||||||||||||||||||||||||||||||||| ||| || ||||||||||
Sbjct: 8584 tatttgaacatcagatgtaacaagtatataagttgaaggtgtcttcatcca 8634
>3x_Contig1213
Length = 3226
Score = 143 bits (72), Expect = 7e-34
Identities = 104/112 (92%), Gaps = 2/112 (1%)
Strand = Plus / Minus
Query: 600 tgctaaatacgaagctgagctgagaggaactaggatcagcatcaaggctacagcacccag 659
||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 173 tgctaaataagaagctgagctgagagcaactaggatcagcatcaaggctacagca-ccat 115
Query: 660 tatttgaacatcagatgtaacaagtatataagtaga-agtttcttcatccaa 710
||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 114 tatttgaacatcagatgtaacaagtatatgggtagatggtttcttcatccaa 63
>3x_Contig1670
Length = 9382
Score = 133 bits (67), Expect = 7e-31
Identities = 103/112 (91%), Gaps = 6/112 (5%)
Strand = Plus / Minus
Query: 600 tgctaaatacgaagctgagctgagaggaactaggatcagcatcaaggctacagcacccag 659
||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 152 tgctaaataagaagctgagctgagaggaactag----agcatcaaggctacagcacc-at 98
Query: 660 tatttgaacatcagatgtaacaagtatataagtagaa-gtttcttcatccaa 710
||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 97 tatttgaacatcagatgtaacaagtctataagtagaaggtttcttcatccaa 46
>3x_Contig1803
Length = 52241
Score = 111 bits (56), Expect = 3e-24
Identities = 84/92 (91%), Gaps = 1/92 (1%)
Strand = Plus / Minus
Query: 547 tgttgttctctggcgttgtaggagcctttctaatgcgccagttattgaaccaatgctaaa 606
|||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 51606 tgttgttccctggcgttgtaggagcacttctaaggcgccagttattgaaccaatgctaaa 51547
Query: 607 tacgaagctg-agctgagaggaactaggatca 637
|| ||||||| ||||| || ||||||||||||
Sbjct: 51546 taagaagctgaagctgggatgaactaggatca 51515
>3x_Contig1701
Length = 10926
Score = 105 bits (53), Expect = 2e-22
Identities = 84/93 (90%), Gaps = 1/93 (1%)
Strand = Plus / Minus
Query: 546 ctgttgttctctggcgttgtaggagcctttctaatgcgccagttattgaaccaatgctaa 605
|||||||| |||||||||||||||| |||||| ||||||||||||||| |||||||||
Sbjct: 5382 ctgttgttacctggcgttgtaggagcagttctaaggcgccagttattgaaacaatgctaa 5323
Query: 606 atacgaagctg-agctgagaggaactaggatca 637
||| ||||||| |||||||| ||||||||||||
Sbjct: 5322 ataagaagctgaagctgagacgaactaggatca 5290
>3x_Contig1806
Length = 53694
Score = 103 bits (52), Expect = 6e-22
Identities = 64/68 (94%)
Strand = Plus / Minus
Query: 546 ctgttgttctctggcgttgtaggagcctttctaatgcgccagttattgaaccaatgctaa 605
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 41705 ctgttgttctctggcgttgtaggagcatttctaaggcgccagttattgaaccaatgctag 41646
Query: 606 atacgaag 613
||| ||||
Sbjct: 41645 ataagaag 41638
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6517
Number of Sequences: 1807
Number of extensions: 6517
Number of successful extensions: 107
Number of sequences better than 1.0e-20: 9
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)