BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZC03FM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig931 1396 0.0
>3x_Contig931
Length = 3901
Score = 1396 bits (704), Expect = 0.0
Identities = 803/823 (97%), Gaps = 10/823 (1%)
Strand = Plus / Minus
Query: 86 tagcttgttgaaggtgaaatatcatcatcgtgttacatgacttgcaaaaattttagcaat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3798 tagcttgttgaaggtgaaatatcatcatcgtgttacatgacttgcaaaaattttagcaat 3739
Query: 146 ggtgatctttaactgtgatatctttaaatcatccaacaaaagtatgcaaaacgaagcgaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3738 ggtgatctttaactgtgatatctttaaatcatccaacaaaagtatgcaaaacgaagcgaa 3679
Query: 206 catatctatcggttgttccttcaagttaaacagaaggtctgctttgtgtcatttttagta 265
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3678 catatctatcggctgctccttcaagttaaacagaaggtctgctttgtgtcatttttagta 3619
Query: 266 gataggcatctctgttaagcaatccaggatgctctctgtcagaatttctgccaggcaatg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3618 gataggcatctctgttaagcaatccaggatgctctctgtcagaatttctgccaggcaatg 3559
Query: 326 ttctgtgcgcggattggcaactcaagcgaacaatgtttctcaaccagctaaagacaacgc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3558 ttctgtgcgcggattggcaactcaagcgaacaatgtttctcaaccagctaaagacaacgc 3499
Query: 386 aactaacggcagcgatgctgcaactgagaaaaagggaacagctagatatcaacgaattca 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3498 aactaacggcagcgatgctgcaactgagaaaaagggaacagctagatatcaacgaattca 3439
Query: 446 gccttcggtggccctaaatagtttgaaaactaaattatcgaatgatttccagaagcagca 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3438 gccttcggtggccctaaatagtttgaaaactaaattatcgaatgatttccagaagcagca 3379
Query: 506 accagctcaaaaaatatactctcagttccaatcggatctacaacaattaatttctgagca 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3378 accagctcaaaaaatatactctcagttccaatcggatctacaacaattaatttctgagca 3319
Query: 566 gcaagtcaatccaagacatttcgttaacagctctatctgtaactccgttttggcaaagtt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3318 gcaagtcaatccaagacatttcgttaacagctctatctgtaactccgttttggcaaagtt 3259
Query: 626 gattctccaaagtaagtccgaacttgatggtcaaagcatcggtgaatctgcttc-attnc 684
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 3258 gattctccaaagtaagtccgaacttgatggtcaaagcatcggtgaatctgcttcaattcc 3199
Query: 685 accaacaccatttgagattttggaaacttactt-aaatacaatctagcacgttatcaaca 743
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 3198 accaacaccatttgagattttggaaacttacttaaaatacaatctagcacgtcatcaaca 3139
Query: 744 cttcattattagtg-taaaacagntttttatttgacctacaaccaaa-gaagctatcaat 801
|||||||| ||||| |||||||| |||||| |||||||||||||||| ||||||||||||
Sbjct: 3138 cttcatta-tagtgttaaaacag-tttttaattgacctacaaccaaaggaagctatcaat 3081
Query: 802 ctggtggatttcctttctagagcacgctaacaaaatgcc-ttgaataacactggaacatg 860
|| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 3080 ct-gtggatttcctttctagagcacgctaaacaaatgccattgaataacactggaacatc 3022
Query: 861 gcagttcca-gctttaacatcaattgcttattttgatgttatc 902
||| |||| |||||||||||||||||||| ||||||||||||
Sbjct: 3021 gcaagtccaggctttaacatcaattgctta-tttgatgttatc 2980
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6554
Number of Sequences: 1807
Number of extensions: 6554
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)