BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZC03RM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1379 1223 0.0
>3x_Contig1379
Length = 6767
Score = 1223 bits (617), Expect = 0.0
Identities = 639/647 (98%)
Strand = Plus / Plus
Query: 49 gtggacgattgttgatcccatccgttcaacaaattcggttgcaagcttgaacctaacgta 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3671 gtggacgattgttgatcccatccgttcaacaaattcggttgcaagcttgaacctaacgta 3730
Query: 109 ttaaatccagcctgagcatgaggggacatttctgacatggaaagagaaggtggaatgaac 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3731 ttaaatccagcctgagcatgaggggacatttctgacatggaaagagaaggtggaatgaac 3790
Query: 169 acattgcctgcgttcaatccaccttggtgatctacattcgataacacatatgaaccaagc 228
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 3791 acattgcctgcgttcaatccaccttggtgatctacattcgataacacagatgaaccaagc 3850
Query: 229 aagtcgttttgattccgcgaaggtgaagacgacaatgatttagaaacttcattgatcatg 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3851 aagtcgttttgattccgcgaaggtgaagacgacaatgatttagaaacttcattgatcatg 3910
Query: 289 ttgaaaatgtcatcattcaacgttgaattattctgtagaggattggttgaaacggatccg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3911 ttgaaaatgtcatcattcaacgttgaattattctgtagaggattggttgaaacggatccg 3970
Query: 349 taaggaacaccttcggttgttgtgtcttgatttttttgcattgacttctcattcaatttt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3971 taaggaacaccttcggttgttgtgtcttgatttttttgcattgacttctcattcaatttt 4030
Query: 409 tgattttcctttagtttttgaagctgttctgcttccttcttcttcaaaaggcgttgttct 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4031 tgattttcctttagtttttgaagctgttctgcttccttcttcttcaaaaggcgttgttct 4090
Query: 469 tcaaattcacgctgttttctttccttttccattttcttttgtttttgttcttcttcgcgc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4091 tcaaattcacgctgttttctttccttttccattttcttttgtttttgttcttcttcgcgc 4150
Query: 529 tgtctcttttgttcctcctttttcttacgaatgcgctcttgttcttcttnccgacgtctt 588
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 4151 tgtctcttttgttcctccttttctttacgaatgcgctcttgttcttcttcccgacgtctt 4210
Query: 589 tgctccgctaactntttcttacgtttctcatcattcttgcgtttagcttcttcacctttt 648
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 4211 tgctccgctaactttttcttacgtttctcatcattcttgcgtttagcttcttcaactttt 4270
Query: 649 ttcctctgaacttcttttcgagcaatctccttttcctcagcttcttt 695
||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 4271 ttcctctgagcttctcttcgagcaatctccttttcctcagcttcttt 4317
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,587
Number of Sequences: 1807
Number of extensions: 13587
Number of successful extensions: 229
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)