BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZC05FM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1645 1292 0.0
>3x_Contig1645
Length = 12736
Score = 1292 bits (652), Expect = 0.0
Identities = 725/744 (97%), Gaps = 4/744 (0%)
Strand = Plus / Plus
Query: 85 tgtgccagatatttgggtaatagagggttttctattggtatcaatgatgtcacaccggga 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 tgtgccagatatttgggtaatagagggttttctattggtatcaatgatgtcacaccggga 834
Query: 145 agcgatttaaaacaaaagaaggaacaaatggttgaaagtgcatacgctaaatgtgacgaa 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 agcgatttaaaacaaaagaaggaacaaatggttgaaagtgcatacgctaaatgtgacgaa 894
Query: 205 ttgattgaccttttcaataaaggtaaattggaaactcaaccgggttgtaatgaagagcaa 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 ttgattgaccttttcaataaaggtaaattggaaactcaaccgggttgtaatgaagagcaa 954
Query: 265 acattggaagccaagattggtggtctcttatcgaaagtcagagaagaagtcggtgaagtg 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955 acattggaagccaagattggtggtctcttatcgaaagtcagagaagaagtcggtgaagtg 1014
Query: 325 tgtatcagagaactagacaacttgaatgctccgttgattatggcaacttgtggttccaag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1015 tgtatcagagaactagacaacttgaatgctccgttgattatggcaacttgtggttccaag 1074
Query: 385 ggttccactttgaacgtgtcgcagatggttgcagtcgtcggtcaacagattatttctggt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1075 ggttccactttgaacgtgtcgcagatggttgcagtcgtcggtcaacagattatttctggt 1134
Query: 445 aatcgtgttccggatggtttccaagatcgttcattgccccacttccctaagaactctaaa 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1135 aatcgtgttccggatggtttccaagatcgttcattgccccacttccctaagaactctaaa 1194
Query: 505 actcctcagtcgaaaggttttgttagaaattctttcttttcaggcctttctcccccagaa 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1195 actcctcagtcgaaaggttttgttagaaattctttcttttcaggcctttctcccccagaa 1254
Query: 565 ttcttatttcacgcaatttcaggtcgtgaaggtcttgtggatactgctgttaaaacagct 624
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1255 ttcttattccacgcaatttcaggtcgtgaaggtcttgtggatactgctgttaaaacagct 1314
Query: 625 gatactggttatatgtcccgtagattgatgaaatcattgggagatttgccttgtcaatat 684
|| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 1315 gaaactggttatatgtcccgtagattgatgaaatcattggaagatttgtcttgtcaatat 1374
Query: 685 gataatactgttagaacgtcttccaatgttattgttcaatttacatat-gtggggatggg 743
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||
Sbjct: 1375 gataatactgttagaacgtcttccaatggtattgttcaatttacatatggtggggat-gg 1433
Query: 744 tttagatcccttgaatttgggaaggtaac-cacaacccggggattttaacaggtcatggg 802
||||||||| ||| || | |||||||||| ||||||| | | |||| ||||||||||||
Sbjct: 1434 tttagatccgttggatat-ggaaggtaacgcacaaccagtgaatttcaacaggtcatgga 1492
Query: 803 cccctgcgaataacctaaccttaa 826
| | ||||||||||||||||||||
Sbjct: 1493 cacatgcgaataacctaaccttaa 1516
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6663
Number of Sequences: 1807
Number of extensions: 6663
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)