BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC42ZC05RM1.SCF screened BAC_end
         (885 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1295                                                        1368   0.0  

>3x_Contig1295 
          Length = 7117

 Score = 1368 bits (690), Expect = 0.0
 Identities = 813/840 (96%), Gaps = 11/840 (1%)
 Strand = Plus / Plus

                                                                        
Query: 49   acgttggt-accgtttccaagatgtatgtttcgaaaatggaattactgtcatgggtatgc 107
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290  acgttggtcaccgtttccaagatgtatgtttcgaaaatggaattactgtcatgggtatgc 349

                                                                        
Query: 108  aaggaaacatcgacggtgtttctggtgatattgctttgttggcaccatcattcatcatca 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350  aaggaaacatcgacggtgtttctggtgatattgctttgttggcaccatcattcatcatca 409

                                                                        
Query: 168  ccgaagacgatgtctccaccattgtggaaagagttaccaagtctgttgatgatatgaccg 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410  ccgaagacgatgtctccaccattgtggaaagagttaccaagtctgttgatgatatgaccg 469

                                                                        
Query: 228  ttctactaaaggctgaaggccatttctgagaaggcttcagctgtgctaagtattctaacg 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470  ttctactaaaggctgaaggccatttctgagaaggcttcagctgtgctaagtattctaacg 529

                                                                        
Query: 288  actatataacggcacatacgtagacgtattgtgccacctcttctctgtacttgttcttta 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530  actatataacggcacatacgtagacgtattgtgccacctcttctctgtacttgttcttta 589

                                                                        
Query: 348  aaactccatgtctcatcataacagttatgtgtcaagcaaatcagttccttttttcctaat 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590  aaactccatgtctcatcataacagttatgtgtcaagcaaatcagttccttttttcctaat 649

                                                                        
Query: 408  atttttttgacactttgaacctttaagctgtttttattcgcgtaaatgtatattattaac 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650  atttttttgacactttgaacctttaagctgtttttattcgcgtaaatgtatattattaac 709

                                                                        
Query: 468  aaagtgatcgaaactaaaatatcagcaggaaagtcaaaaatagaaggccgagttaagggt 527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710  aaagtgatcgaaactaaaatatcagcaggaaagtcaaaaatagaaggccgagttaagggt 769

                                                                        
Query: 528  cctacattaacatcaacgtagtaagattttcttagtaactcacaaattccggcccagtaa 587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770  cctacattaacatcaacgtagtaagattttcttagtaactcacaaattccggcccagtaa 829

                                                                        
Query: 588  gtagatatatatatgtacgtcttttttcggcattgtagagcatctgctgtaagcttatca 647
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830  gtagatatatatatgtacgtcttttttcggcattgtagagcatctgctgtaagcttatca 889

                                                                        
Query: 648  gctgtcattactttctgctncgtcagcattgatgaaaaccccgctcatatctcattaac- 706
            |||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||| 
Sbjct: 890  gctgtcattactttctgctcggtcagcattgatgaaaacccggctcatatctcattaact 949

                                                                        
Query: 707  tcgnctcgctcct-atgtaaagatttatacct-agaaat-attaggaatgattagtgaat 763
            ||| ||||||||| |||||||||| ||||||| |||||| || ||||||||| |||||||
Sbjct: 950  tcgcctcgctcctaatgtaaagatatatacctaagaaataataaggaatgataagtgaat 1009

                                                                        
Query: 764  ctatccaaaaa-ctggtccaactattctt-aaccta-ttttcttttactgggtgagtcac 820
            ||||||||||| ||||||||||||||||| |||||| |||||||| |||| |||||||||
Sbjct: 1010 ctatccaaaaacctggtccaactattcttcaacctagttttctttcactgtgtgagtcac 1069

                                                                        
Query: 821  actttttta-caaatatccatttgt-aggtacattttttttca-tgtccctatcaaaact 877
            ||| || || |||||| |||| ||| || ||||| |||||||| |||| |||||||||||
Sbjct: 1070 actattataccaaatacccatatgtaagttacatcttttttcagtgtcactatcaaaact 1129


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7065
Number of Sequences: 1807
Number of extensions: 7065
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 885
length of database: 10,358,551
effective HSP length: 16
effective length of query: 869
effective length of database: 10,329,639
effective search space: 8976456291
effective search space used: 8976456291
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)