BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZC06FM1.SCF screened BAC_end
(897 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1607 1023 0.0
>3x_Contig1607
Length = 10159
Score = 1023 bits (516), Expect = 0.0
Identities = 599/623 (96%), Gaps = 3/623 (0%)
Strand = Plus / Minus
Query: 88 taatcaaacgctgtgaagaacttgatgaaccaattcctcatgatgagcacttatccgata 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5010 taatcaaacgctgtgaagaacttgatgaaccaattcctcatgatgagcacttatccgata 4951
Query: 148 tgaaccctcaattcaaatatatgtactaatacccccccccccaccttcttagtcagagtc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4950 tgaaccctcaattcaaatatatgtactaatacccccccccccaccttcttagtcagagtc 4891
Query: 208 aaaaattaaaacaaagaacttcgaacggtttccttatctgaacttacaacattgtatttt 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4890 aaaaattaaaacaaagaacttcgaacggtttccttatctgaacttacaacattgtatttt 4831
Query: 268 attagtattaggtttgtattaatgtataaattaaagattacacgactttttattgtggcc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4830 attagtattaggtttgtattaatgtataaattaaagattacacgactttttattgtggcc 4771
Query: 328 ttttttctagtagtacatatagtctcttctattatcaaggcattcataaatattgaatgt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4770 ttttttctagtagtacatatagtctcttctattatcaaggcattcataaatattgaatgt 4711
Query: 388 tgtatcatgagaattatttgccgttaacatcatccggtgtggatggaatgccatagtgga 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4710 tgtatcatgagaattatttgccgttaacatcatccggtgtggatggaatgccatagtgga 4651
Query: 448 aatgaaaggcgatgatcttgcaccagtagtcatcccactaattggtcctgaatgagaaga 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4650 aatgaaaggcgatgatcttgcaccagtagtcatcccactaattggtcctgaatgagagga 4591
Query: 508 accgtgattctttaaagtgcgtnacatatcttcaaatgttgtccataatttgatttcttt 567
|||||||||||| || |||||| ||| |||| || |||||||||||||||||||||| ||
Sbjct: 4590 accgtgattcttaaaggtgcgtaacaaatctccagatgttgtccataatttgatttc-tt 4532
Query: 568 tcgttccagttgctattattgaagcgtgttcgggtacttgcatacttgtaatggtactgc 627
|||| ||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 4531 tcgtcccagttgctataattgaagcgtgttcgtgtacttgcatacttgtcatggtactgc 4472
Query: 628 ctagctt-tttcctggttcaccttcattaatgaaactggcaaacaggttaataacctttg 686
||||||| || |||||||||||||||| | || ||| ||||||||||| || | || ||
Sbjct: 4471 ctagcttcttccctggttcaccttcatcagtg-aacgtgcaaacaggtttatcagctctg 4413
Query: 687 atgtcccatagggcaacaccccc 709
|||||||||||||||||| ||||
Sbjct: 4412 atgtcccatagggcaacaacccc 4390
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6966
Number of Sequences: 1807
Number of extensions: 6966
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 897
length of database: 10,358,551
effective HSP length: 16
effective length of query: 881
effective length of database: 10,329,639
effective search space: 9100411959
effective search space used: 9100411959
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)