BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZC06RM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1770 1187 0.0
>3x_Contig1770
Length = 29267
Score = 1187 bits (599), Expect = 0.0
Identities = 698/726 (96%), Gaps = 6/726 (0%)
Strand = Plus / Minus
Query: 49 tgcagaaaacttgggagaagctaacaaacacacatacacttccgtctgtattattttctg 108
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12196 tgcagaaaacttgg-agaagctaacaaacacacatacacttccgtctgtattattttctg 12138
Query: 109 atccagcaacgtattggtacaacttacctatatgcgcgccaggttcgaagaattccttgt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12137 atccagcaacgtattggtacaacttacctatatgcgcgccaggttcgaagaattccttgt 12078
Query: 169 tttcagcctataactctttcgttaatgtcggtttaaacaagaaggagaaggaaagaaaaa 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12077 tttcagcctataactctttcgttaatgtcggtttaaacaagaaggagaaggaaagaaaaa 12018
Query: 229 gactgcaactatcgaaaaagaaagtagtcatgagtgatttgttaatgagtatcgatgatt 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12017 gactgcaactatcgaaaaagaaagtagtcatgagtgatttgttaatgagtatcgatgatt 11958
Query: 289 tgatagaaaatgattatccaattcacttggattcaccaggtctaatagaagagttcaagg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11957 tgatagaaaatgattatccaattcacttggattcaccaggtctaatagaagagttcaagg 11898
Query: 349 aaacattggaaaaattatactcgtccccttattattcagagtggacggacaccaagacta 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11897 aaacattggaaaaattatactcgtccccttattattcagagtggacggacaccaagacta 11838
Query: 409 ttgaccgtgatggccctcgaacatttgcaatagattgtgaaatgtgtatgtcagaaaacg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11837 ttgaccgtgatggccctcgaacatttgcaatagattgtgaaatgtgtatgtcagaaaacg 11778
Query: 469 gacatgttctaacccgatgcagtattgtaaatttcgacggtgatctcatttatgataaat 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11777 gacatgttctaacccgatgcagtattgtaaatttcgacggtgatctcatttatgataaat 11718
Query: 529 tggtgaagcctgatgttcncattatagattatttgaccaagtacagcggnaatatcgaat 588
|||||||||||||||||| ||||||||||||||||||||||||||||| | | ||||
Sbjct: 11717 tggtgaagcctgatgttccaattatagattatttgaccaagtacagcggaataaccgaag 11658
Query: 589 gataactacgcgacgttactactacattgaaggatgtacaggnagggatcttctcaatat 648
| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 11657 aaaaactacgcgacgttactactacattgaaggatgtacagga--ggatcttctcaatat 11600
Query: 649 cattagctcanaggatggtattattgggacattcgttgcagntcggaccttaacgtttta 708
|||||||||| ||||| |||||| | ||||||||||||||| ||||||||||||||||||
Sbjct: 11599 cattagctcaaaggat-gtattaattggacattcgttgcag-tcggaccttaacgtttta 11542
Query: 709 aagctaagaacttccattttcgttgacccggcgtttttttacgagcacaaagcagggtcc 768
||||||||| | ||| | |||||||| |||| || ||||||||||||||||| |||||
Sbjct: 11541 aagctaagacatcccaatatcgttgacacggcagttatttacgagcacaaagca-ggtcc 11483
Query: 769 tccatt 774
||||||
Sbjct: 11482 tccatt 11477
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7598
Number of Sequences: 1807
Number of extensions: 7598
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)