BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZC07RM1.SCF screened BAC_end
(961 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1612 396 e-110
>3x_Contig1612
Length = 15608
Score = 396 bits (200), Expect = e-110
Identities = 278/296 (93%), Gaps = 6/296 (2%)
Strand = Plus / Minus
Query: 289 tcgtttggtttttccctttattctcaaagcgataaagtcttttcgattgactttgaacgg 348
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15608 tcgtttggtttttcc-tttattctcaaagcgataaagtcttttcgattgactttgaacgg 15550
Query: 349 aggaaagaaagaaggaagaaaagnaagcacggaccaagtacaagctactagtatgagtgt 408
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 15549 aggaaagaaagaaggaagaaaag-aagcacggaccaagtacaagctactagtatgagtgt 15491
Query: 409 cgatgatgttgggtttcttttctttgacccttttttgtgataagcatggtccgaag-ttc 467
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 15490 cgatgatgttgggtttc-tttctttgacccatttttgtgataagcatggtccgaagtttc 15432
Query: 468 taatggttacgccaatagcttttgatctggatagggggaatgaacttattgttaccaaag 527
|||||||||||| |||||||| ||||||||||||| | ||||||| ||||||||||| ||
Sbjct: 15431 taatggttacgcaaatagcttctgatctggataggtgtaatgaac-tattgttaccagag 15373
Query: 528 tattcaaagga-ttcgtactgggactcaggtttggtgagacttcccgaacccaaat 582
||| ||||||| ||||||||| |||||| ||||| |||||||||| ||||| ||||
Sbjct: 15372 tatccaaaggatttcgtactgtgactcatgtttgttgagacttccagaaccaaaat 15317
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8452
Number of Sequences: 1807
Number of extensions: 8452
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)