BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZC08FM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1338 880 0.0
>3x_Contig1338
Length = 8134
Score = 880 bits (444), Expect = 0.0
Identities = 552/581 (95%), Gaps = 7/581 (1%)
Strand = Plus / Minus
Query: 87 catatcgaagacatcacaattaattcagtagacgttcacataaggtaacaattccacaga 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6123 catatcgaagacatcacaattaattcagtagacgttcacataaggtaacaattccacaga 6064
Query: 147 taccagaaacattggacctttcatttccctggttacaaaatttctttgaacggaagaatt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6063 taccagaaacattggacctttcatttccctggttacaaaatttctttgaacggaagaatt 6004
Query: 207 acacagccctaccatagacgaacttctcgacaaaacggctggatcttggttctaacattt 266
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6003 acacagccctaccagagacgaacttctcgacaaaacggctggatcttggttctaacattt 5944
Query: 267 tctttggcgactgcaatttaatgaatcagcgtgtcttccaaaagacataatgactcccga 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5943 tctttggcgactgcaatttaatgaatcagcgtgtcttccaaaagacataatgactcccga 5884
Query: 327 cagattgagacgtgcagaattctgtcagcgtctttgaaaaaatacctgaacgattagtaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5883 cagattgagacgtgcagaattctgtcagcgtctttgaaaaaatacctgaacgattagtaa 5824
Query: 387 gaatagatctatgtttttgcagttgtggaccctattgaatttagtacagtcctgattaag 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5823 gaatagatctatgtttttgcagttgtggaccctattgaatttagtacagtcctgattaag 5764
Query: 447 ccagggtcctttctanggaaaaagtaatcttttcggttaattaggtagcagggagattgt 506
||||||||| ||||| |||||| ||||||||| | ||||||||||||||||||||||||
Sbjct: 5763 ccagggtcc-ttctagggaaaatgtaatctttcggtttaattaggtagcagggagattgt 5705
Query: 507 ttgtagccatttccgttggtttaacagcattaaga-tagacgatgctttaactgatttgn 565
||||||||||| | |||| || ||||||||||||| |||||||||||||||||||||||
Sbjct: 5704 ttgtagccattccggttgtttaaacagcattaagattagacgatgctttaactgatttgt 5645
Query: 566 gtttctttcgcctcaatttatgaggttcttggacaatttgacaaatccagaaccttcttt 625
| |||||||| ||||||||||||| ||||| ||| |||||||||| ||| | |||||||
Sbjct: 5644 g-ttctttcgtctcaatttatgagtttctt-gacgatttgacaaagtcag-agcttcttt 5588
Query: 626 gcctttaattcctaacccgaattcgtacacagattgcttgg 666
| ||||||||| || || | |||||||||||||||||||
Sbjct: 5587 gtctttaattc--tacgcggagtcgtacacagattgcttgg 5549
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6648
Number of Sequences: 1807
Number of extensions: 6648
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)