BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC42ZC08RM1.SCF screened BAC_end
         (914 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1762                                                        1287   0.0  

>3x_Contig1762 
          Length = 22098

 Score = 1287 bits (649), Expect = 0.0
 Identities = 715/731 (97%), Gaps = 5/731 (0%)
 Strand = Plus / Plus

                                                                         
Query: 48    tatctattgctcaaccttacccaaaggttgccccattttgactttgtcgccaacgttgat 107
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11526 tatctattgctcaaccttacccaaaggttgccccattttgactttgtcgccaacgttgat 11585

                                                                         
Query: 108   tttgaagttaaactctcttggtgcttcaaagcataaaaccactgttgatcctaacatgaa 167
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11586 tttgaagttaaactctcttggtgcttcaaagcataaaaccactgttgatcctaacatgaa 11645

                                                                         
Query: 168   accacccatttcttcaccctttatcaaaggcacgccacctaatactttgctagcattttc 227
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11646 accacccatttcttcaccctttatcaaaggcacgccacctaatactttgctagcattttc 11705

                                                                         
Query: 228   atatgttgcttcataacaagtatgcggtttacaatgtctctgagttttttcatttgtaat 287
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11706 atatgttgcttcataacaagtatgcggtttacaatgtctctgagttttttcatttgtaat 11765

                                                                         
Query: 288   tagttctttatcaaagttcaatttgatcgatccgacatttgtagctccgactggggtcat 347
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11766 tagttctttatcaaagttcaatttgatcgatccgacatttgtagctccgactggggtcat 11825

                                                                         
Query: 348   actaaagaatccatgctntccagtgacctaacaatgcaacacgttcattgagaacaaaca 407
             ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11826 actaaagaatccatgct-tccagtgacctaacaatgcaacacgttcattgagaacaaaca 11884

                                                                         
Query: 408   agtttgggaaatttctctggaaataaggtgccaccgagaagagctcacctgggaaatgac 467
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11885 agtttgggaaatttctctggaaataaggtgccaccgagaagagctcacctgggaaatgac 11944

                                                                         
Query: 468   gacgaagtttgcaaacccaatttactggagaatggtagtgatgataatcaccaggagcca 527
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11945 gacgaagtttgcaaacccaatttactggagaatggtagtgatgataatcaccaggagcca 12004

                                                                         
Query: 528   aataaatgaccgcaaaatatagctgggtatcggtagaagataatttttgtttgacatagt 587
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12005 aataaatgaccgcaaaatatagctgggtatcggtagaagataatttttgtttgacatagt 12064

                                                                         
Query: 588   tgggggatagctcacccaata-ggtaaaagtcttggaagaatcttgatctgagatggctt 646
             ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 12065 tgggggatagctcacccaatagggtaaaagtcttggaagaatcttgatctgagatggctt 12124

                                                                         
Query: 647   ggntcttttccattttat-atcgaaagggtg-aaatggnctt-actttgagatcttgggg 703
             || ||||||||||||||| ||||||||| || |||||| ||| ||||||||| | |||||
Sbjct: 12125 ggttcttttccattttataatcgaaaggttgtaaatggtcttcactttgagaacctgggg 12184

                                                                         
Query: 704   gatgacccatgatatcgttcaaactgtttgggatatcattgattcttgcaatatctctgg 763
              |||||| ||||||||||||||||||| |||||||||||||||||||||||  |||||| 
Sbjct: 12185 tatgaccaatgatatcgttcaaactgtatgggatatcattgattcttgcaaattctctgt 12244

                        
Query: 764   gatcattatca 774
             |||||||||||
Sbjct: 12245 gatcattatca 12255


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6441
Number of Sequences: 1807
Number of extensions: 6441
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)