BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZC09FM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig471 854 0.0
>3x_Contig471
Length = 2964
Score = 854 bits (431), Expect = 0.0
Identities = 508/530 (95%), Gaps = 3/530 (0%)
Strand = Plus / Minus
Query: 86 tcatcgttggtgaaagtcgattcaagatcattttcaggttcttctgataaattagtcttg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2462 tcatcgttggtgaaagtcgattcaagatcattttcaggttcttctgataaattagtcttg 2403
Query: 146 cctaagcgaattttcttcggcagcaggagctgctgattcactgtttgctgcattcttctt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2402 cctaagcgaattttcttcggcagcaggagctgctgattcactgtttgctgcattcttctt 2343
Query: 206 cttcttcttcttcttgtttttattcttgttgctagacttataagcaggctcgttcacgtc 265
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 2342 cttcttcttcttcttgtttttattcttgttgctagacttagaagcaggctcgttcacgtc 2283
Query: 266 ttgagtatcaccttcatgctcggcttcatctttatctttagcctcgtctttggcttcagc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2282 ttgagtatcaccttcatgctcggcttcatctttatctttagcctcgtctttggcttcagc 2223
Query: 326 tgaggcttcagctgaggcttcangtgtctcttcagcctcttcagccttagtaagttcatt 385
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 2222 tgaggcttcagctgaggcttcaggtgtctcttcagcctcttcagccttagtaggttcatt 2163
Query: 386 ttcagctacatcttcagatttttcttcgatgacaggttcactttcttcaatttcttcctt 445
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 2162 ttcagctacatcttcagaattttcttcgatgacaggttcactttcttcaatttcttcctt 2103
Query: 446 gacactgtcttcaattacttctttgancacccgtttctgttttctgagctgggttcttct 505
|||||| ||||||||||||||||||| || ||| |||||||| ||||||| || ||||||
Sbjct: 2102 gacactttcttcaattacttctttga-caaccggttctgtttcctgagct-ggctcttct 2045
Query: 506 tcctgagctggctctttttcctgagctggctcttctttccgagctggctctttcttctga 565
|||||||||||||||| |||||||||||||||||||| | |||||||||||| | ||||
Sbjct: 2044 tcctgagctggctcttcttcctgagctggctcttcttcctgagctggctcttcttcctga 1985
Query: 566 actggctcttcttcttgagccgggtttatccttttccttggccgaaccct 615
|||||||||||||||||| | |||||||||| ||||| |||||||||||
Sbjct: 1984 gctggctcttcttcttgag-ctggtttatcctcttcctcggccgaaccct 1936
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,720
Number of Sequences: 1807
Number of extensions: 17720
Number of successful extensions: 632
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)