BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZC09RM1.SCF screened BAC_end
(850 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig88 985 0.0
>3x_Contig88
Length = 1299
Score = 985 bits (497), Expect = 0.0
Identities = 581/598 (97%), Gaps = 11/598 (1%)
Strand = Plus / Plus
Query: 48 ttgtatccaacccataaggtttaataagaattctttccccagaacgagattttgattcaa 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ttgtatccaacccataaggtttaataagaattctttccccagaacgagattttgattcaa 742
Query: 108 gagtagttgcatctaataaatctagttcaggaggattattcaattggaaacaacggtagc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gagtagttgcatctaataaatctagttcaggaggattattcaattggaaacaacggtagc 802
Query: 168 tcgagaattgaagaacatttgccgaagtagcaggagatggtcgacatactattaaatatt 227
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 803 tcgagaattgaagaacatttgccgaagtagcaggagatggtcgacatactagtaaatatt 862
Query: 228 ccgaaaataggtagcaaacctggtgttggaaatttatgccatctaatgatatcaaaaaat 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 ccgaaaataggtagcaaacctggtgttggaaatttatgccatctaatgatatcaaaaaat 922
Query: 288 tatctatcaatcgtaagagtccatatttagcatcaatttcccaaggcttgacttcgctaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 tatctatcaatcgtaagagtccatatttagcatcaatttcccaaggcttgacttcgctaa 982
Query: 348 aactattcaaaaacgctttgaatgaaatactgcctttgaacgtgcaaagaaggcagttga 407
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983 aactattcaaaaacgc-ttgaatgaaatactgcctttgaacgtgcaaagaaggcagttga 1041
Query: 408 cagtcatctttcgaggaagatgatacgatggacgacaagccagaaaccgtacttcctctg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1042 cagtcatctttcgaggaagatgatacgatggacgacaagccagaaaccgtacttcctctg 1101
Query: 468 aagttggatcttctttttatactgcgactcctatgcaaacggatggaatctcngagagat 527
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1102 aagttggatcttctttttatactgcgactcctatgcaaacggatggaatctcgaagagat 1161
Query: 528 ggagtaaccgttttccctggtttcaaag-aaatgcaaaga--tacctgatatcgt--att 582
|||||||||||||||||||||||||||| ||||||||| | |||||||||||| ||
Sbjct: 1162 ggagtaaccgttttccctggtttcaaagaaaatgcaaaaaataacctgatatcgttattt 1221
Query: 583 cttgcag-tgttcta-tagtctgc-aatgtggaaacgttt-atca-tacctgagtgct 635
||||||| ||||||| |||||||| ||||||||||||||| |||| ||||||||||||
Sbjct: 1222 cttgcagttgttctagtagtctgcaaatgtggaaacgtttcatcattacctgagtgct 1279
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5984
Number of Sequences: 1807
Number of extensions: 5984
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 850
length of database: 10,358,551
effective HSP length: 16
effective length of query: 834
effective length of database: 10,329,639
effective search space: 8614918926
effective search space used: 8614918926
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)